Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02301 ATGTCTCACTCTCTTTGCCGGCCAAACATAATTCAGAAAATAATGTCAGGAGTGGAAATTTGGTCATCCATTGAAGAAGAATCTAGTAAATCTCCGCCTCCATTTGATAACAGGAGTGGCTACAATTCAAGAACAGGCCTTTATCAATCTCTTGTTAAGCTTGGCACCAAGCATGGAATCCCAACAAGGCCTGATCTTAACACTGCCACTCTTGTGCTTTCACAGTTCCCACATGCACACCTTGCTGAGGCAAAAATTGCATACACTGATTCAGGTACTAATCAGAGTGTAACCTATGGTGAGCTTCGAAGGTCTATTTACTCCCTTGCATCAGCCTTGTTCCATGGACTTGAGATAAGAAAAGGGGATGTGGTGTTTGTATTGTCCCCAAACTCAATATCGTACTCAACCATTTGCTTAGCTGTGTTATCAGTTGGAGCAGTTCTAACCACTGCCAACCCCCTCAACACTGAGTCAGAAATTGCCAAGCAAGTACGTGATTCAGGTGCTAAACTAGCCATCTCAGCACCAGAAGAGCTACACAAATTGGTCCCAACTGGGGTTCCTACAATTCTCACCTCTCGTCCATCTGATGGGAAAATGTTATCAGTTGAAGAGTTAATAGAAGGCTGCTATAATTCACTTGAGTTGCCACATGTTCCTGTGGCACAGTCAGATACTGCTGCTATACTTTACTCTTCAGGGACTACAGGAGTAAGCAAAGGTGTAGTTTTGACACATGCAAATCTCATTTCCATTATGAAACTACTCTTCTGGTCTGCTGATGTATCTGCATCACAAGATGATGTTTTCTTGGCCTTCATTCCAATGTTTCACATATATGGACTGGTTTTCTTTGGATTGGGGTTGTTGTGTGTTGGTGTTACAACAATTCTGATGCAGAAATTTGACTTCCAAGCTATGCTTGTTGCGATCCAGAAGCACAAAGTTAATAACTTGCCAGCAGTTCCGCCAGTGCTCCATGCACTGGCAAAATATGCAAGCAATGCTGGGTTTGACTTGTCAAGCCTAAGAAGGGTGGGTTCAGGGGCTGCACCTTTGAGTAAGGAAGTGGCACAGGAGTTTAGAAAGATGTTTCCATGGGTTGAACTAAGGCAAGGTTATGGTCTAACAGAAAGTTGTGGTGCGGCAACATTTTCAGTGTCAGATAAAGATGCTAAAGCTCATCCAGACTCATGTGGGAAGCTGGTTCCAACTTTTTGTGCAAAAGTGATAGACACTGAATCTGGAAAGCCTTTGCCTCCCAACAAGGAAGGAGAGTTATGGCTGAAAAGTCCCACTATTATGAAAGGATATCTAGGAAATTTGGAGGCAACAACTGCGACAGTTGATTCAGAAGGTTGGTTGAGGACAGGTGATCTTGCTTATATTGACGAGAATGGATTTGTTTATATTGTTGAACGAATAAAGGAGCTAATCAAGCACAAAGGGTATCAGGTGGCTCCAGCAGAACTGGAATCTGTGCTGCTAAGCCATCCCCTTATTGTTGATGCAGCAGTTATACCGGTTGAAGATGAGGAAAGTGGACAGATACCAATGGCATATGTGGTGAGAGCAACTGGTTCTGAACTCTCAGAAGACCAAATCATTCAATTTGTTGCTGGCCAGGTGGCTCCATATAAGAAAGTGAGAAGGGTGAGTTTCATTGACACTATTCCAAGGTCAGCTGCTGGGAAGATATTGCGGAAGGATCTTGTTGCTCAAAGCAAATATCAACTTGTGTCCAAGTTATGA 1755 0.4319 MSHSLCRPNIIQKIMSGVEIWSSIEEESSKSPPPFDNRSGYNSRTGLYQSLVKLGTKHGIPTRPDLNTATLVLSQFPHAHLAEAKIAYTDSGTNQSVTYGELRRSIYSLASALFHGLEIRKGDVVFVLSPNSISYSTICLAVLSVGAVLTTANPLNTESEIAKQVRDSGAKLAISAPEELHKLVPTGVPTILTSRPSDGKMLSVEELIEGCYNSLELPHVPVAQSDTAAILYSSGTTGVSKGVVLTHANLISIMKLLFWSADVSASQDDVFLAFIPMFHIYGLVFFGLGLLCVGVTTILMQKFDFQAMLVAIQKHKVNNLPAVPPVLHALAKYASNAGFDLSSLRRVGSGAAPLSKEVAQEFRKMFPWVELRQGYGLTESCGAATFSVSDKDAKAHPDSCGKLVPTFCAKVIDTESGKPLPPNKEGELWLKSPTIMKGYLGNLEATTATVDSEGWLRTGDLAYIDENGFVYIVERIKELIKHKGYQVAPAELESVLLSHPLIVDAAVIPVEDEESGQIPMAYVVRATGSELSEDQIIQFVAGQVAPYKKVRRVSFIDTIPRSAAGKILRKDLVAQSKYQLVSKL* 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02301 584 CDD 4CL 60 572 - -
Rops6g02301 584 SUPERFAMILY Acetyl-CoA synthetase-like 76 575 - -
Rops6g02301 584 FunFam 4-coumarate--CoA ligase 2 478 579 - -
Rops6g02301 584 Gene3D - 60 477 IPR042099 -
Rops6g02301 584 Pfam AMP-binding enzyme 84 481 IPR000873 -
Rops6g02301 584 ProSitePatterns Putative AMP-binding domain signature. 230 241 IPR020845 -
Rops6g02301 584 Gene3D - 478 580 IPR045851 -
Rops6g02301 584 FunFam Long-chain-fatty-acid--CoA ligase FadD 57 477 - -
Rops6g02301 584 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 61 574 - -
Rops6g02301 584 Pfam AMP-binding enzyme C-terminal domain 491 566 IPR025110 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02301 Rops-Chr6 41667524 41670212 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02301 38 580 Monolignol Biosynthesis Gene Families AT4G05160 44.565 1.10e-157 461
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02301 K10526 - gmx:100783104 941.414
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g02301 6 41667524 41670212 Rops6g02301 6 41667524 41670212 ECH