Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02298 ATGGCTGTCACTCACGGTCCCGGCTTCCGATTCCACCCCACCGATCAGGAGCTTGTAATTTACTACCTCAAACGCAAGCTCACCGGAAAAATCCCCTTATGCTACGATTACATCGGCGACGTTGACATATACAAGTTCGAGCCATGGGATCTTCCTTCTTTGTCGAAGCTGAAGAGTGGTGACTTGGAATGGTTTTTCTTTACCTTGCTGGACAAGAAGTACGGAAATGGTTCCAGGACTAACCGTGCCACTGACAGAGGATTTTGGAAAACAACAGGCAACGATCGTGCCGTCAAGCAGGGTGAACGAACGGTCGGAATGAAGAAGACTCTTGTCTACCACTCTGGCCGGGCACCACATGGAACCCGCACAAATTGGGTCATGCACGAATACCGTTTGGTTAATCCATTGATCCAGGGTGCAACAGTGCAGGATGCTACTGTGCTGTGTAGGATATTCGAGAAGAGTGGTTCTGGGCCTAAGAATGGGGAGAGTCATGGTGCTCCCTTTAGAGAGGCGGATTGGGCGAATGCTGATGATGAGGGGGTGCATCCTGTGCCGGCTGTTGCTGATGAAAACCATTTGAATCAACTGCCTCCTGAAGTTGCTCTTGTTGGTTATATTGAACAGGAAGACCTTGAGCAGAAGCTGGAACCAAGTACTATGATTGGCAATGCTGGTTTTCACTATGGGGAATGTAGTAGCCATCCCAAGCATTCCCAAGTATTTGTCAACAACCAGGAGCCATTGGGAGGCTCTTCTGGAATTTCTGACCTTCGAAATGGCCATCCAGTGCTAAACAATGGAGACCATGGTGAGCTCAGCCATGAGGACACTCCTCTTAATTTCAATGATCCTATTCAGGATCTAGATCTTCTAAGTTGGGATCCCTCTGATTATTCTCCAATTGTTGACAATGAAAATTACTTCGAAGGCATGGATCTTGTGATGAATCTGGGTGAGGTTAATCCTGCTGAGGCAAATTCTTCTGTTACTGAGATGCTAAATGAGTATATTACATTCTCTGATGAGGATGATATTTCCAAGTATATATCTTATTCTCCTCAGAGTATTGGGAGTGAAAGCCCTATTCCTGACCAAGGACCACCTTTCATTCAGCAGAATGTGGAGGGAGAAACCAATGATATTTCCCTGGCAAGCAAGCATGTTTTTGAAGCACAATCTAGCAATGAAGCTTCTTTGGAGCTTAATCCACAGGCATCCGAGTTGGTATCAGGAGATACAAATCCAGTTGTAAAGCAGGCCAATAAATGGTTGGCCAGCATACCTGCTGCACCTGCATTTGCTTCTGAGTTTCCTACTAAGGAGTTTACTCTTGGGCTTCATCCTGCTGCTCAGTCTTCCAATTCGGCTCATGTAACTGCAGGTATGATCAGCATAACAGACATTACTTTAAGAGGCAATGTGATGGATTGGAGGGTGGGCAAGAATGGAGGGTTTGATCCCATAATGTCCACTGGGTTTTCTCAACCTGGTGTTTACTCTGCTGCTTTGATGCCTATTTCTGGCTTGGTCTCTAGAAAGACTGCATTTATGTTGTCACATGGCTGGATTTTCTTGATGGGTTTTTCGGTTCTGATTCTTTCCCTGAGTTTCAAGATTGGAAGCTTCATGCATACTGAGAAAATGGCCCCAAAACAATCGAAGGCTGAGTTGCTTGATCGTCTACAGTTTGGGAGGGTCATTGTGAGTTATGAACCCCAACCTCGTCAAAAGAGACTGAGGTTTTCCGATCCTCTGAGTAGTGATTTGCTTCCTGTCCCATTTGGCTCGATCGAGATGCCTTTGGGTGGGAATGTCCCTCCTCCAAGCTTTAAGCCTGTTCCCTCTTCAACTATTATTCCCGATTTGCCTATTGGTGTCGAAGGTGTGGTGACTTGGGTGGGCGAATCCAATAATCCTGAGGAGATATCCCTCTGGCACCCTACATTTAATCATACGTCTCATATCGACCAGCATCTGAGGTTCCCCGTAGATGATGAAAACTTCAAGAAAATTGGGAACTGTGGGTTATCTCAGTCATTGAGGATGGCCGCAATGACTCGTGCTGTTGAGGAGAATTATAAACATGGAGAAATTCAATACACTCTTTTAAAAAATGAAAGGGAATTTTTGGCGCAAAAGGTCGTTGATCTCCAAGATTCAGAGGCTCGTATAAAAGCTTTGGAGGATGAACTTGCATCCTTGAAGGTTAATCATAACAAATTGGTCGAGGAAAAGGCCAAAAGTGACAATGAGGTGGTTAAGCTTCAGGCAGAGAATAATGAAGTTATTTTCATGTATGATTCAGCATTGACAGAATGGGCCAATGAGGAGACGTATTTCCTTAATCAGATCAATGAGTATTGCCAAGAAGGAGCTCTCCAATATGTTGAAGGCTTTAACAACGCCTTGTCCCAAGCTTGGGTTATAGTTCCAAATGCCGACTTTTCGCCTATTAACATTGCGAATGAAGTTGTAGATGGTGAAATAGTTCCGATTAGGCGAGGAGATCAAGTTGGGTCAGGCGAACGATTAAATGATGAAAGTTCTCGTGCTGCAGATGCTGATGTCCAAGGGAATGTCCCTTATGGACTTATGTACCCTTTTTGA 2613 0.4489 MAVTHGPGFRFHPTDQELVIYYLKRKLTGKIPLCYDYIGDVDIYKFEPWDLPSLSKLKSGDLEWFFFTLLDKKYGNGSRTNRATDRGFWKTTGNDRAVKQGERTVGMKKTLVYHSGRAPHGTRTNWVMHEYRLVNPLIQGATVQDATVLCRIFEKSGSGPKNGESHGAPFREADWANADDEGVHPVPAVADENHLNQLPPEVALVGYIEQEDLEQKLEPSTMIGNAGFHYGECSSHPKHSQVFVNNQEPLGGSSGISDLRNGHPVLNNGDHGELSHEDTPLNFNDPIQDLDLLSWDPSDYSPIVDNENYFEGMDLVMNLGEVNPAEANSSVTEMLNEYITFSDEDDISKYISYSPQSIGSESPIPDQGPPFIQQNVEGETNDISLASKHVFEAQSSNEASLELNPQASELVSGDTNPVVKQANKWLASIPAAPAFASEFPTKEFTLGLHPAAQSSNSAHVTAGMISITDITLRGNVMDWRVGKNGGFDPIMSTGFSQPGVYSAALMPISGLVSRKTAFMLSHGWIFLMGFSVLILSLSFKIGSFMHTEKMAPKQSKAELLDRLQFGRVIVSYEPQPRQKRLRFSDPLSSDLLPVPFGSIEMPLGGNVPPPSFKPVPSSTIIPDLPIGVEGVVTWVGESNNPEEISLWHPTFNHTSHIDQHLRFPVDDENFKKIGNCGLSQSLRMAAMTRAVEENYKHGEIQYTLLKNEREFLAQKVVDLQDSEARIKALEDELASLKVNHNKLVEEKAKSDNEVVKLQAENNEVIFMYDSALTEWANEETYFLNQINEYCQEGALQYVEGFNNALSQAWVIVPNADFSPINIANEVVDGEIVPIRRGDQVGSGERLNDESSRAADADVQGNVPYGLMYPF* 871
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02298 870 Coils Coil 712 760 - -
Rops6g02298 870 SUPERFAMILY NAC domain 4 155 IPR036093 GO:0003677|GO:0006355
Rops6g02298 870 MobiDBLite consensus disorder prediction 259 282 - -
Rops6g02298 870 ProSiteProfiles NAC domain profile. 5 155 IPR003441 GO:0003677|GO:0006355
Rops6g02298 870 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 7 194 - -
Rops6g02298 870 Gene3D NAC domain 14 158 IPR036093 GO:0003677|GO:0006355
Rops6g02298 870 Pfam No apical meristem (NAM) protein 7 133 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02298 Rops-Chr6 41636844 41645532 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02298 335 541 NAC Transcription Factor Family AT5G04410 30.698 1.07e-15 79.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Rops6g02298 NAM 3.3e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02298 - - aprc:113871167 645.195