Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02297 ATGGGTCGCGAAACTCTCTTCCTTCCAGCCCCACCAACCCCATCAGCCACCACCACAGTGAACCCACCAGCACCAGCTGCAGCTGCAGCACCTTCAGCACCAGCACCACCTACTTCCCTTGCTCCTGGCTTCAGGTTCCACCCAACTGATGAGGAGCTTGTTATTTATTACCTCAAACGCAAGGTTTGTGGGAAAAGCTTCCGATTCGATGCTATATCTGAGGTTGATATATACAGGAGCGAGCCCTGGGACCTAGCAGATAAATCAAGGTTGAAGACCAGGGACCAAGAGTGGTATTTCTTTAGTGCATTGGACAAGAAATATGGGAATGGTGGCAGAATGAATAGGGCTACGAGCAAAGGGTACTGGAAAGCCACTGGGAATGATCGTCCGGTTAAGCATGACCAAAGAACTGTGGGGTTGAAGAAAACTTTGGTGTTTCATAGTGGCCGAGCTCCTGATGGTAAGAGGACAAATTGGGTCATGCATGAGTACAGGCTTGTTGATGAAGAGCTTGAGAGGGCTGGGACTGGATCCTCTCAGCCTCAGGATGCATATGTCTTGTGTAGAGTATTTCACAAAAATAACATAGGACCTCCAAATGGGCAACGGTATGCACCCTTCATTGAAGAAGAGTGGAATGATGCATCAGGAATGGTTCCCGGGGCAGAGCCTGTGAATAACGGTTCCGTTGCCAACGGTCCACGTGTTGAAGGCACTGGTGACGTTTTATGCATTGAAGGGAGAAATGATGTTGTACAGGACACTCAATCTATCAATAAAGCTCCATTTGATGTGAACAAGCTTCCAATAGAAACTCAAAATCTCCTTGCTGTGTGCAAGAGGGAGAGTATGGCTGAGTACCCATCACCAGAAAAGGATGATTGTAAGCATGTGCATATGGATGAGAATCCTTCACCCCAAACAGATAATCCAAAACCCTTCTCTCAAATATACAAAAGAAGGCGGCATAACTTGAACTCCAACCATTCTAATATCTCTGGAGACTCGATCCAAACCAGCCAGGATCCATGCTCATCCACCATAACCACTGCTGCGACAACCCTCCCGACAACCACCACCACAACAACCAACACTGCGCCGAAAAAACATTTTCTGTCTGCATTGGTGGAGTATTCTCTGCTAGAATCTCTTGAATCAAAGGAAGGCCTTTCCTCGGTTCAGCCGCCGGATTTCAATGCAGCCGATCTTGAGTCATCTGTGCCTCCAAGCTGTGCAAAGTTCATCAAACACTTGCAGAGTGAGATGCAGAAACTTGGTGTTGAAAGGGAGGCAATGAGGTTTGAGTTGATGAGTGCTCAAGCCATGATTAACATTCTCCAGACTCGTGTTGACATCCTCAACCAAGAAAATGAGGAACTGAAGAGGAGGATCGAAAATCCTTAG 1407 0.4719 MGRETLFLPAPPTPSATTTVNPPAPAAAAAPSAPAPPTSLAPGFRFHPTDEELVIYYLKRKVCGKSFRFDAISEVDIYRSEPWDLADKSRLKTRDQEWYFFSALDKKYGNGGRMNRATSKGYWKATGNDRPVKHDQRTVGLKKTLVFHSGRAPDGKRTNWVMHEYRLVDEELERAGTGSSQPQDAYVLCRVFHKNNIGPPNGQRYAPFIEEEWNDASGMVPGAEPVNNGSVANGPRVEGTGDVLCIEGRNDVVQDTQSINKAPFDVNKLPIETQNLLAVCKRESMAEYPSPEKDDCKHVHMDENPSPQTDNPKPFSQIYKRRRHNLNSNHSNISGDSIQTSQDPCSSTITTAATTLPTTTTTTTNTAPKKHFLSALVEYSLLESLESKEGLSSVQPPDFNAADLESSVPPSCAKFIKHLQSEMQKLGVEREAMRFELMSAQAMINILQTRVDILNQENEELKRRIENP* 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02297 468 MobiDBLite consensus disorder prediction 288 304 - -
Rops6g02297 468 Pfam No apical meristem (NAM) protein 42 167 IPR003441 GO:0003677|GO:0006355
Rops6g02297 468 SUPERFAMILY NAC domain 34 195 IPR036093 GO:0003677|GO:0006355
Rops6g02297 468 MobiDBLite consensus disorder prediction 1 43 - -
Rops6g02297 468 FunFam Nac domain-containing protein 86 49 197 - -
Rops6g02297 468 Gene3D NAC domain 49 197 IPR036093 GO:0003677|GO:0006355
Rops6g02297 468 ProSiteProfiles NAC domain profile. 40 194 IPR003441 GO:0003677|GO:0006355
Rops6g02297 468 Coils Coil 437 464 - -
Rops6g02297 468 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 39 328 - -
Rops6g02297 468 MobiDBLite consensus disorder prediction 288 315 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02297 Rops-Chr6 41598673 41606067 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02297 1 464 NAC Transcription Factor Family AT3G10480 43.423 5.19e-117 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Rops6g02297 NAM 4.8e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02297 - - gmx:100808783 726.472