Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02293 ATGGAAGCACCAGAGGAACTCTCTTTGGGGTCCAAAGAGCACACCAACATTGTCAAAGGGAAGAGAACCAAAAGGGTAAGGCCACAATCCCCTATCCCCTTCTCCATCACTGCTAATTCTTCCACCCAAGAAGGAGAAAGAGAAGATTGCTACAACGTTGATGGTGACCACAACAACAACAACAAAGATGATGATAATAACAATAACAATAACAGCTCCCCCACCACTTCTTCTGCAGGGTTACAAGACAGCACTGATGAAGAAGAGGACATGGCAAATTGCCTCATCCTTTTGGCTCAAGGACAATCAAGAGAATCTCCCAAACCCACAGATGAAGATGGTGGCATGAACTACACAAAGTACAGCAGTAGAAAATTCTTGGAAGCTGCTACCTTGGGGTCTGGCAGGGCAGGGTACTATGTTTATGAATGTAAAACATGTAGCAGAACTTTCCCTTCATTTCAAGCTCTTGGAGGCCACAGGGCTAGTCATAAGAAACCAAAGGCAATGGCCATTGGTCAAGAGAAAAAGCAACTATTTTTATCATCAGATGAGGAAGAGTTTCAATTCAAGACCAATAAATCATCACTTTCCCTTCAATTGAACACAAGGGGGAATTTGCATAGCAATAACAGCAAGTCCAAGGTTCATGAGTGCTCTATTTGTGGTGCTGAATTCACATCAGGGCAGGCACTTGGTGGCCATATGAGGCGTCACCGTGCACCGGTAGGGACCAACACCACACTCTCATTGATACCAATGGCTTTGGAACCAGAAGAAGATCAACCCAGAAAGAAAAGGAATGTTTTGTCTTTGGATTTGGATCTCAACCTTCCTGCACCTGAAGATGATCAAAGAGAATCCAAGTTTGCCTTTGCATCCAAGCAACAACAACAACATCAGCATCAACAACATCAACAACAACAGCAGCAGCAACAACAGCAACAGCAACAGCAACAACAACAAACAAGTCTTGTCTTCTCTGCCCCAACTTTGGTGGATTGTCATTACTGA 1014 0.4398 MEAPEELSLGSKEHTNIVKGKRTKRVRPQSPIPFSITANSSTQEGEREDCYNVDGDHNNNNKDDDNNNNNNSSPTTSSAGLQDSTDEEEDMANCLILLAQGQSRESPKPTDEDGGMNYTKYSSRKFLEAATLGSGRAGYYVYECKTCSRTFPSFQALGGHRASHKKPKAMAIGQEKKQLFLSSDEEEFQFKTNKSSLSLQLNTRGNLHSNNSKSKVHECSICGAEFTSGQALGGHMRRHRAPVGTNTTLSLIPMALEPEEDQPRKKRNVLSLDLDLNLPAPEDDQRESKFAFASKQQQQHQHQQHQQQQQQQQQQQQQQQQQTSLVFSAPTLVDCHY* 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02293 337 MobiDBLite consensus disorder prediction 64 82 - -
Rops6g02293 337 ProSitePatterns Zinc finger C2H2 type domain signature. 219 239 IPR013087 -
Rops6g02293 337 ProSiteProfiles Zinc finger C2H2 type domain profile. 217 239 IPR013087 -
Rops6g02293 337 Gene3D Classic Zinc Finger 140 239 - -
Rops6g02293 337 MobiDBLite consensus disorder prediction 30 46 - -
Rops6g02293 337 MobiDBLite consensus disorder prediction 278 322 - -
Rops6g02293 337 PANTHER ZINC FINGER PROTEIN ZAT5 73 308 - -
Rops6g02293 337 MobiDBLite consensus disorder prediction 1 88 - -
Rops6g02293 337 MobiDBLite consensus disorder prediction 47 63 - -
Rops6g02293 337 SUPERFAMILY beta-beta-alpha zinc fingers 141 239 IPR036236 -
Rops6g02293 337 Coils Coil 295 322 - -
Rops6g02293 337 ProSitePatterns Zinc finger C2H2 type domain signature. 144 164 IPR013087 -
Rops6g02293 337 ProSiteProfiles Zinc finger C2H2 type domain profile. 142 169 IPR013087 -
Rops6g02293 337 SMART c2h2final6 142 164 IPR013087 -
Rops6g02293 337 SMART c2h2final6 217 239 IPR013087 -
Rops6g02293 337 MobiDBLite consensus disorder prediction 291 322 - -
Rops6g02293 337 Pfam C2H2-type zinc finger 141 167 - -
Rops6g02293 337 Pfam C2H2-type zinc finger 216 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02293 Rops-Chr6 41559202 41560701 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02293 1 337 C2H2 Transcription Factor Family AT5G04390 46.475 3.26e-87 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Rops6g02293 zf-C2H2_6 6.7e-13 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02293 - - gmx:100799383 469.929