Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02289 ATGTTTTCAACGTTGATAGGTCCCCACGAAGGGAGTGCTGTGCAGGATGGTGGTGTGAATCATGGTCACCTGGGAGACCCGTGTCTTGTTCTTACTTCTGATCCAAAACCTCGTCTTCGTTGGACTACTGACCTTCATGAACGTTTTGTTGATGCTGTCACTCAACTTGGGGGTGCTAGTAAAGCCACACCAAAAGCGATCATGAGGACCATGAATGTCAAGGGTTTGACACTCTATCATTTAAAGAGTCATCTTCAGAAGTACAGGCTTGGTAAGCAATCAGGAAAAGATTCCGATGAGGGATGCAAAGATGGAACATCAGCTTCATATCTTCTAGAAAGCCCTGGTACTGACAACTCATCTCCAAAGTTACCAGCTTCTGATGCAAATGAGGGTCATGAAGTCAAGGAGGCATTAAGAGCACAGATGGAAGTGCAAAGTAAACTACATTTACTGGTGGAGGCAGAGAAGCACTTGCAAATTCGCCAGGATGCAGAACGGAGATATATGGCCATGCTTGAGAGAGCATGTAAGATGTTGGCTGAACAATTTATTAGCGATACCATTATAGACACTGACAGCCAAAAATTTCAAGGATTGGAAAATAAAGCATCAAGAAGTTCCTTAGTTGATTCTGTAGGCTTTTGCTCTTTACCAAGTACTGAGGTAGGTGGAATGCATGTTTCAGAAGTACCACCTATTCTCCAGTCTCAAGGGGCTGACTGCTCCACTGAAAGTTGCCTAACATCACTTGAGAGTATCGGAGGGTTGACTCTAGAAGGATCTCCTGGTGGAACAAAGAAGAGGATGCTGAGCTTAGACTCAATGGTAGCACCTTTGATGTGGAGTGAAACCAACATGAGAACTCAAGGCATCCATTTAACCAAAGTCAATCCTTATGGAACAACTAGGTATGGCATGTAG 924 0.4405 MFSTLIGPHEGSAVQDGGVNHGHLGDPCLVLTSDPKPRLRWTTDLHERFVDAVTQLGGASKATPKAIMRTMNVKGLTLYHLKSHLQKYRLGKQSGKDSDEGCKDGTSASYLLESPGTDNSSPKLPASDANEGHEVKEALRAQMEVQSKLHLLVEAEKHLQIRQDAERRYMAMLERACKMLAEQFISDTIIDTDSQKFQGLENKASRSSLVDSVGFCSLPSTEVGGMHVSEVPPILQSQGADCSTESCLTSLESIGGLTLEGSPGGTKKRMLSLDSMVAPLMWSETNMRTQGIHLTKVNPYGTTRYGM* 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02289 307 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 17 253 IPR044848 GO:0003700
Rops6g02289 307 MobiDBLite consensus disorder prediction 91 133 - -
Rops6g02289 307 FunFam Myb family transcription factor 35 93 - -
Rops6g02289 307 Pfam MYB-CC type transfactor, LHEQLE motif 134 179 IPR025756 -
Rops6g02289 307 Gene3D - 35 93 - -
Rops6g02289 307 MobiDBLite consensus disorder prediction 110 126 - -
Rops6g02289 307 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 33 93 IPR017930 -
Rops6g02289 307 NCBIfam myb-like DNA-binding domain, SHAQKYF class 36 91 IPR006447 GO:0003677
Rops6g02289 307 Pfam Myb-like DNA-binding domain 39 89 IPR001005 -
Rops6g02289 307 SUPERFAMILY Homeodomain-like 36 92 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02289 Rops-Chr6 41502154 41505607 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02289 1 251 G2-like Transcription Factor Family AT3G24120 46.992 1.03e-66 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Rops6g02289 Myb_DNA-binding 1.3e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02289 - - gmx:100779871 529.635