Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02280 ATGACAGAGCTCAAACATCTTAAGAATATCTCATTGTTTAACAACCAGTTCTCGGGAGTCATACCTCAAAGCTTAGGAATTAATAGCAGTTTGGTACAGTTGGACTTCATGCACAATAAGTTCACTGGTACCCTCCCACCAAATCTTTGTTTTGGAAAGAAATTGGTCAAGCTGAATATGGGTGGCAATCAATTTCATGGTAGCATACCTCCTGATCTAGGAAGGTGCACAACTCTTACAAGGGTGAGACTTGAAGAGAATAACTTCACTGGGCCTCTTCCTGATTTTGAAACCAATCCAAACATCTCATACATGTGGATCAGCAAGAACAATATAAGTGGGGCAATTCCATCAAGTTTAGGAAACTGCACAAATCTCTCTCTTTTAGATTTGTCCACGAACAACTTTAGGGGTCATATACCCTCAGAGCTAGGAAGCCTTGTGAATCTTCAGGCTTTGGATCTTTCTCACAATAACTTGGAAGGTCCTTTGCCACATCAGCTCTCAAACTGTACCAAAATGATGACATTTGATATGGGATTCAATTTCCTAAATGGTTCATTTCCATCAAGTTGGAAGAGCTGGACACAATTAACCGTTTTAATTCTCAGACAATCATTTAGTGAGGGTATCCCAGCTTTCTTGTCAGAATTCGAAGAGCTTAATGACTTACAACTTGGTGGAAATATGTTTGGAGGAAATATTCCTAGATCAATTGGAAAATTGCAGCATTTGTTATATGGGTTAAATCTAAGTGCTAATGGGCTGATAGGTGAGCTTCCTAGGGAGATTGGAAACCTGAAGAGTCTGCTAAGTTTGGATCTATCTTGGAACAATTTGACTGGAAGCGATCCTGGCCTATGTGTCAGTTTTTCATTATCACATGGCTTGAATTTGACTAAAATGAGCTATTTAAGGCCATGTGACAACCCAACAAAATCAAAAAGCCTCAATAAAGTTGCAATTGTGATGATAGCACTTGGATCCTCCATATTTGTTGTTCTACTGTTGGGACTAATTTATGTATCTTTTGTCAGAAAAACTAAGCAGGAAGCCATAAACACTGAGGAAGATGGTTCTTCAGCCCTTCTCAAAGAAGTGATGAAAGCTACAGAGAACCTAAATGATCGCTACATGGCAAATGGAAGTCTTCATGAGGCTTTGCATGATAAGAATCCTCCACAATCTTTAGAATGGAGTGTCCGCAATAAGATAGCTATTGGAATTGCTCATGCATTGGCTTATCTTCATTATGACTGTGATCCTATCATAGTGCATAGAGACATCAAAACAAGCAATATACTTCTGGATGCTGAAATGGAGCCTCGTGTTGCAGATTTTGGTGTTGCTAAGCTTTTGGATCAACCTTCTACCTCAACACAATCTATATCTGTTACTGGTACACTTAGTTATATTGCACCAGTTATCGGGTGCTTTTTGCTGGAGCTGATATCCAGAAAGAAGGCATTAGATCCATCATTTATGGAAGGAACAGGCATAGTTAATTGGGTAAGATATGTGTGGGAGGAAACAGGAGCTATTGATGAAATTGTTGATTCAGAGCTTGCTGATGAAATTTCAAATTCTAATGTAATAATGAAACAAGTAGCCAAGGTGCTTTTGTTGGCTTTGAGATGTACAGAAAAGGATCCATGTAAGAGACCAACAATGAGAGATGTTATCAAGCATTTGTAG 1695 0.3888 MTELKHLKNISLFNNQFSGVIPQSLGINSSLVQLDFMHNKFTGTLPPNLCFGKKLVKLNMGGNQFHGSIPPDLGRCTTLTRVRLEENNFTGPLPDFETNPNISYMWISKNNISGAIPSSLGNCTNLSLLDLSTNNFRGHIPSELGSLVNLQALDLSHNNLEGPLPHQLSNCTKMMTFDMGFNFLNGSFPSSWKSWTQLTVLILRQSFSEGIPAFLSEFEELNDLQLGGNMFGGNIPRSIGKLQHLLYGLNLSANGLIGELPREIGNLKSLLSLDLSWNNLTGSDPGLCVSFSLSHGLNLTKMSYLRPCDNPTKSKSLNKVAIVMIALGSSIFVVLLLGLIYVSFVRKTKQEAINTEEDGSSALLKEVMKATENLNDRYMANGSLHEALHDKNPPQSLEWSVRNKIAIGIAHALAYLHYDCDPIIVHRDIKTSNILLDAEMEPRVADFGVAKLLDQPSTSTQSISVTGTLSYIAPVIGCFLLELISRKKALDPSFMEGTGIVNWVRYVWEETGAIDEIVDSELADEISNSNVIMKQVAKVLLLALRCTEKDPCKRPTMRDVIKHL* 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02280 564 Gene3D Ribonuclease Inhibitor 1 310 IPR032675 -
Rops6g02280 564 Gene3D Transferase(Phosphotransferase) domain 1 379 564 - -
Rops6g02280 564 FunFam Os07g0541700 protein 379 468 - -
Rops6g02280 564 ProSiteProfiles Protein kinase domain profile. 246 564 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g02280 564 Pfam Protein kinase domain 377 563 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g02280 564 SUPERFAMILY RNI-like 3 316 - -
Rops6g02280 564 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 53 304 - -
Rops6g02280 564 SMART serkin_6 319 564 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g02280 564 Pfam Leucine rich repeat 101 160 IPR001611 GO:0005515
Rops6g02280 564 SMART LRR_typ_2 147 171 IPR003591 -
Rops6g02280 564 SMART LRR_typ_2 267 290 IPR003591 -
Rops6g02280 564 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 58 559 - -
Rops6g02280 564 ProSitePatterns Serine/Threonine protein kinases active-site signature. 424 436 IPR008271 GO:0004672|GO:0006468
Rops6g02280 564 SUPERFAMILY Protein kinase-like (PK-like) 378 564 IPR011009 -
Rops6g02280 564 PRINTS Leucine-rich repeat signature 150 163 - -
Rops6g02280 564 PRINTS Leucine-rich repeat signature 267 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02280 Rops-Chr6 41400885 41403425 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02280 377 564 Receptor kinase-like Gene Family AT1G73080 47.368 1.67e-51 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Rops6g02280 Pkinase 2e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02280 - - gmx:100802056 536.569