Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02275 ATGGGGTATCTCTCTTTGCTTCTGTGCTTTTCTACGTTGTTATATGCTGCTTCTGCCTTGAGCTCTGAAGGGTGGACTTTGTTGTCACTCTTGAGGCACTGGACTATTGTGCCTAATGACATAAACTCCACATGGAAGGCCTCTGATTCCACTCCATGCTCATGGGCAGGAGTGCACTGTGATCATGCCAAGAATGTAGTATCTCTAAAGCTCAGTGATTATTCCATTTTTGGTCAATTAGGACCTGAAATTGGACATTTGATTCACTTGCAAAACATAGACTTGTCAAGTAATGATCTCTCTGGAAAAATTCCCCCTGAATTAAGCAATTGTAGCATGCTTGAGCACTTGGAGCTTTCTGCAAACAATTTTAGTGCAGGAATACCTGAGAGCTTCAAAGACTTGCAAAATTTGAAGTTCATGGACATGTCTTCTAATCAACTTACTGGTGAGATTCCTGAATCCTTGTTTAAAATTCCTCACCTGGAAGAAGTGTATCTCAACAACAACAGTTTAAGTGGTTCCATTCCCACAAGTATTGGGAACATCACTAAGCTTGTCTCACTATATCTTCAAAGTAATCAATTGTCAGGGACAATTCCCATATCTATTGGAAACTGTAGTAAATTACAGAATCTGATTTTGGACTCAAATCAATTGCAGGGAACTATTCCTGAGAGTCTAAACAATTTAGAAGATCTCTATGATTTGAGTCTCAATCGCAATGATCTTGGAGGTACCATTCAGTTGGGATCTAGAAATTGCAAAAAGCTATCTTATCTGAGTCTCTCTTACAATGTGTTTAGTGGGGGTATTCCTCCAAGCTTGGGGAATTGCAGTGGTCTAATAGAGTTTTATGCTGCACATAATAACTTAGTCGGCAGTATACCATCAACCTTGGGTCTCCTGCACAATCTTTCAATTCTAATAATTCCATGGAACTTTTTATCTGGGAAAATACCTCCACAGATTGGTAATTGCAAGTCATTGGTTGAGTTACATTTGTATTCCAATGGACTTGAGGGAGAAATTCCTAGTGAGTTGGGAAACTTGAGTAAATTGCGTGATCTTAGATTGTATGAAAACCTTTTAACAGGTGAAATTCCACTTAGCATATGGAAAATTAAAAGCCTTGAGCATATCCTTGTGTACAATAATAGCCTTTCTGGGGAGCTACCTTTAGAGATGACACAGCTCAAAAATCTCAAGAATATCTCATTGTTTAACAACCAGTTCTCTGGAGTCATACCTCAAAGCTTAGGAATTAATAGCAGTTTGCTGCAGTTGGACTTAATGTACAATAAGTTCACTGGTTCCCTTCCACCAAATCTTTGTTTTGGAAAGAAGTTAGCCAAGCTGAATATGGGTGGCAATCAATTTCATGGTAGCATACCTCCTGATGTAGGAAGGTGTACCACTCTTGCAAGGGTGAGACTTGAAGAGAATAACTTTACCGGGTCTCTTCCTGATTTTGAAGCCAATCCAAATGTCTCATACATGAGGTTTGGCAAGAACAATATCAGTGGGGCAATTCCATTGAGTTTAGGAAACTGCACAAATCTCTCTCTTTTGGATTTGTCCATGAACAGCTTTAGCGGTCATATACCCTCAGAGCTAGGAAACCTCGTGAATCTCCAGACTTTGGATCTTTCTCACAATAACTTGGAAGGTCCTTTGCCACATCAGCTGTCAAACTGTACCAAAATGATAACCTTTAATGTGGGATTCAATTTCTTAAATGGTTCATTTCCATCAAGTTGGAGGAGCTGGACACGATTAACCACTTTAATTCTCAGAGATAATCACTTCAGTGGGGGTATCCCAGCTTTCTTGTCAGAATTCAAAAATATTAATGAGTTACAACTTGGTGGAAATATGTTTGGAGGAAATATTCCTAGATCAATTGGAAAATTGCAGAACTTGTTATATGGGTTAAATCTAAGTGCCAATGGACTGATAGGTGAGCTTCCTAGGGAGATTGGAAACCTGAAGAGTCTGCTAAGTTTGGATCTATCTTGGAACAATTTGACAGGAAGTATACAAGTTCTTGAAGAGCTCAGTTCATTATCTGAATTCAACATTTCTTACAACTCTTTTGAAGGTCCTGTACCACAACAGCTTATGAAGTTACCAAATTCTCCTTTGTCATTTTTGGGCAATCCTGGCCTATGTGTCAGTTTTTCATTATCATATGGCTTGAATTTCACTGAAAGCAGATATTTAAGGCCATGTGAGGACTCAACAAAATCAAAAAGCCTCAGTAAAGTTGCAACTGTGATGGTAGCACTTGGATCCTCAATATTTGTTGTTCTGCTACTGGGACTAATGTATATATCTTTGGTCAGAAAAACAAAGCAGGAAACCATCATCACTGGAGAAGATGGTTCTTCAGCCCTTCTCAAAGAAGTGATGAAAGCTACAGAGAACCTAAATGATCGGTATATTATTGGCAGAGGAGCTCAAGGAGTTGTTTATAAAGCTGTACTAGGTCCAAACGAAATTTTGGCTGTGAAGAAGCTTGAATTTGCTCAGAATGAAAGGAAACACTCAAGCATGATTAGAGAAATTCAAACCCTTGGAAAGATTAGGCATAGAAATTTGGTCAGGTTGGAAGACTTCTGGTTGAGAGAAAACTATGGTCTAATCACATACAGATACATGTCAAATGGAAGCCTCTATGATGCTTTGCATGAGAAGAATCCTCCACAATCTTTAGAATGGAGTGTCCGCAATAAGATAGCTATTGGAATTGCTCATGCATTGGCTTATCTTCATTATGACTGTGATCCTATCATAGTGCACAGAGACATCAAAACAAGCAATATACTTCTGGATGCTGAAATGGAGCCTCATGTTGCAGATTTTGGTGTTGCTAAGCTTTTGGATCAACCTTCTACCTCAACACAGTCTATATCTGTTACTGGTACACTTGGTTATATTGCACCAGAAAATGCTTATACTACAACAAAGGGTAAGGAATCTGATGTATACAGTTATGGGGTGGTTTTGCTGGAGCTGATATCCAGAAAGAAGGCATTAGATCCATCATTTATGGAAGGAACAGGCATAGTTAATTGGGTAAGATCTGTGTGGGAGGAAACAGGAGCTATTGATGAAATTGTTGATTCAGAGCTTGCTGATGAAATTTCAAATTCTAATGTCATAATGAAACAAGTAACCAAGGTGCTTTTGTTGGCTTTGAGATGTACAGAAAAGGATCCACATAAGAGACCAACAATGAGAGAGGTTATCAAGCATTGGTAG 3264 0.3882 MGYLSLLLCFSTLLYAASALSSEGWTLLSLLRHWTIVPNDINSTWKASDSTPCSWAGVHCDHAKNVVSLKLSDYSIFGQLGPEIGHLIHLQNIDLSSNDLSGKIPPELSNCSMLEHLELSANNFSAGIPESFKDLQNLKFMDMSSNQLTGEIPESLFKIPHLEEVYLNNNSLSGSIPTSIGNITKLVSLYLQSNQLSGTIPISIGNCSKLQNLILDSNQLQGTIPESLNNLEDLYDLSLNRNDLGGTIQLGSRNCKKLSYLSLSYNVFSGGIPPSLGNCSGLIEFYAAHNNLVGSIPSTLGLLHNLSILIIPWNFLSGKIPPQIGNCKSLVELHLYSNGLEGEIPSELGNLSKLRDLRLYENLLTGEIPLSIWKIKSLEHILVYNNSLSGELPLEMTQLKNLKNISLFNNQFSGVIPQSLGINSSLLQLDLMYNKFTGSLPPNLCFGKKLAKLNMGGNQFHGSIPPDVGRCTTLARVRLEENNFTGSLPDFEANPNVSYMRFGKNNISGAIPLSLGNCTNLSLLDLSMNSFSGHIPSELGNLVNLQTLDLSHNNLEGPLPHQLSNCTKMITFNVGFNFLNGSFPSSWRSWTRLTTLILRDNHFSGGIPAFLSEFKNINELQLGGNMFGGNIPRSIGKLQNLLYGLNLSANGLIGELPREIGNLKSLLSLDLSWNNLTGSIQVLEELSSLSEFNISYNSFEGPVPQQLMKLPNSPLSFLGNPGLCVSFSLSYGLNFTESRYLRPCEDSTKSKSLSKVATVMVALGSSIFVVLLLGLMYISLVRKTKQETIITGEDGSSALLKEVMKATENLNDRYIIGRGAQGVVYKAVLGPNEILAVKKLEFAQNERKHSSMIREIQTLGKIRHRNLVRLEDFWLRENYGLITYRYMSNGSLYDALHEKNPPQSLEWSVRNKIAIGIAHALAYLHYDCDPIIVHRDIKTSNILLDAEMEPHVADFGVAKLLDQPSTSTQSISVTGTLGYIAPENAYTTTKGKESDVYSYGVVLLELISRKKALDPSFMEGTGIVNWVRSVWEETGAIDEIVDSELADEISNSNVIMKQVTKVLLLALRCTEKDPHKRPTMREVIKHW* 1088
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02275 1087 Gene3D Ribonuclease Inhibitor 182 251 IPR032675 -
Rops6g02275 1087 SUPERFAMILY Protein kinase-like (PK-like) 798 1087 IPR011009 -
Rops6g02275 1087 Gene3D Ribonuclease Inhibitor 319 421 IPR032675 -
Rops6g02275 1087 Pfam Leucine rich repeat N-terminal domain 23 61 IPR013210 -
Rops6g02275 1087 SUPERFAMILY RNI-like 152 461 - -
Rops6g02275 1087 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 322 420 - -
Rops6g02275 1087 Gene3D Ribonuclease Inhibitor 252 318 IPR032675 -
Rops6g02275 1087 Gene3D Ribonuclease Inhibitor 21 179 IPR032675 -
Rops6g02275 1087 SUPERFAMILY L domain-like 33 200 - -
Rops6g02275 1087 Gene3D Phosphorylase Kinase; domain 1 776 886 - -
Rops6g02275 1087 PRINTS Leucine-rich repeat signature 542 555 - -
Rops6g02275 1087 PRINTS Leucine-rich repeat signature 90 103 - -
Rops6g02275 1087 Pfam Protein kinase domain 815 1086 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g02275 1087 ProSitePatterns Serine/Threonine protein kinases active-site signature. 932 944 IPR008271 GO:0004672|GO:0006468
Rops6g02275 1087 Pfam Leucine Rich Repeat 544 566 IPR001611 GO:0005515
Rops6g02275 1087 ProSiteProfiles Leucine-rich repeat profile. 665 687 IPR001611 GO:0005515
Rops6g02275 1087 FunFam Leucine-rich repeat receptor-like protein kinase PEPR1 19 178 - -
Rops6g02275 1087 FunFam Leucine-rich repeat receptor-like protein kinase PEPR1 179 308 - -
Rops6g02275 1087 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 776 886 - -
Rops6g02275 1087 SMART serkin_6 810 1085 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g02275 1087 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 482 1085 - -
Rops6g02275 1087 Gene3D Ribonuclease Inhibitor 422 730 IPR032675 -
Rops6g02275 1087 ProSiteProfiles Protein kinase domain profile. 810 1087 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g02275 1087 Gene3D Transferase(Phosphotransferase) domain 1 887 1087 - -
Rops6g02275 1087 SUPERFAMILY L domain-like 463 723 - -
Rops6g02275 1087 FunFam Serine/threonine-protein kinase-like protein CCR4 887 1087 - -
Rops6g02275 1087 SMART LRR_typ_2 542 566 IPR003591 -
Rops6g02275 1087 SMART LRR_typ_2 87 111 IPR003591 -
Rops6g02275 1087 SMART LRR_typ_2 351 375 IPR003591 -
Rops6g02275 1087 SMART LRR_typ_2 183 207 IPR003591 -
Rops6g02275 1087 SMART LRR_typ_2 663 686 IPR003591 -
Rops6g02275 1087 SMART LRR_typ_2 135 159 IPR003591 -
Rops6g02275 1087 FunFam Leucine-rich repeat receptor-like protein kinase PEPR1 448 732 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02275 Rops-Chr6 41347642 41351487 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02275 11 1085 Receptor kinase-like Gene Family AT1G73080 51.740 0.0 1040
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Rops6g02275 Pkinase 1.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02275 - - gmx:100802056 1681.77