Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02272 ATGGAGAATAACACCACCTCAGAACCCAACCACAACATTGCAATTGCAAGTGGGCTCACATATGGCATAGTATTTGCAATCGGATTGGTGTTCTTACTAGTGATCATAGGTGTTGCATGTGTGCGCCTTCGCAGGTCTCGGAGTCCCAATATACTCAATATTTTGGCTGGTATTCCACCACCTCATGCAGCAGACTCAATGGAACAAGGCCTTGGTAGTCATCATCATCATCATAATATTAACACCAGTTTTGAGAGGTACCCGAAGCTGCTATACTCTCAAGTGCACAACAAGAGTGGTTCTTCAACTAATTGCTCCATATGCTTAGGGGACTACAAAGAAACTGACATGTTGAGGTTGCTTCCTGATTGTGGTCATCTCTACCACCTTGCTTGTGTTGATCCTTGGCTCAGAACCATTTCTCAATCTCCATCTGTGCCTGTTGGAGACACTGACACAGGTTCCAACCAGACAACAATCAGTGTGGAACCTGAGCTTCGCTTAGATCAGATTGCAAGTGTGTGCAGGTATCCAAGTGTAGGCAAATTGTGTGATAGTAGTTCAAGTTGTTGCATATGCTTGATGGATTATAAAGAATCTGATTTGTTGAGAATGTTGCCTGGTTGTGGCCATTTCTTTCATGTCATGTGTGTTGATCCTTGGTTGAGAATGAATTTGACTTGCCCTGTTTGTAGGAGGATGCCAATCACCCCCTGTGGAAGATTTAGGATGTAA 735 0.4367 MENNTTSEPNHNIAIASGLTYGIVFAIGLVFLLVIIGVACVRLRRSRSPNILNILAGIPPPHAADSMEQGLGSHHHHHNINTSFERYPKLLYSQVHNKSGSSTNCSICLGDYKETDMLRLLPDCGHLYHLACVDPWLRTISQSPSVPVGDTDTGSNQTTISVEPELRLDQIASVCRYPSVGKLCDSSSSCCICLMDYKESDLLRMLPGCGHFFHVMCVDPWLRMNLTCPVCRRMPITPCGRFRM* 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02272 244 SUPERFAMILY RING/U-box 87 141 - -
Rops6g02272 244 ProSiteProfiles Zinc finger RING-type profile. 190 232 IPR001841 -
Rops6g02272 244 SUPERFAMILY RING/U-box 183 237 - -
Rops6g02272 244 ProSiteProfiles Zinc finger RING-type profile. 105 148 IPR001841 -
Rops6g02272 244 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 185 237 IPR045899 -
Rops6g02272 244 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 171 237 IPR013083 -
Rops6g02272 244 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 68 152 IPR013083 -
Rops6g02272 244 Pfam Ring finger domain 189 232 IPR001841 -
Rops6g02272 244 Pfam RING-like zinc finger 104 133 IPR001841 -
Rops6g02272 244 SMART ring_2 105 146 IPR001841 -
Rops6g02272 244 SMART ring_2 190 231 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02272 Rops-Chr6 41335619 41336074 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02272 179 236 C3H Transcription Factor Family AT5G06490 55.172 3.56e-17 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02272 - - vra:106770594 187.963