Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02262 ATGGCAGGAAACTTCAGATTCATGATGGATCAGAAGGATATTGTTAGATTCTTGACTACAACTGTTGATAGTTTCATTCAAGATCGATTAATCAACAAAGAACAAAGATCACAACACAAAGAACAGTGTGCAGAGAGGTTAGCAGCTGAAGATGGAAGTTGTGACAAAGACACTGAGGTGGAATACTCTGATCAAGCAGTATTAGCAAATCTTGATTGGGGTATTGAAGCCCTTGAAGAAGCTATCAATACCTATAACATGGAAACTAAGCTTGCTAGACTAGATTATGCTGAGAAGATGTTGCAAGTGTGTGCAATGTTGAATCCTAAGCAAAAGACTGCTGGAGTGCCAAACTCCTACCTCTCAGCTTGGGCACACCTAAATCTATCCTACTTATGGAAGCTGAGGAACAACATTCAAAATTGTATTTTTCATGCTCTTGAGATGTTCAATGTTGATCCTTTTTTCTCTAGGATTGATTTTGCTCCTGAACTTTGGAAAAACCTGTTTCTTCCACACATGAGCTCAATTGTGGGGTGGTATTCAGAGGAGAGGCACAAACTTATGATGGAAGTGATACCTGATTCTTCTGATATGTCCTTCACAGCAGATTTTGATCAGTTTTTCAATGAATCTTTGGTATTTTCTATGAGGCCACCTCAATTAGATAAGTTGCAAAAGCTGGAGCAACTTTATGGAGAGTCATTGAATGAGAACACAAGGCTATATGCAAAATACTATAATGATTGCGTGAACTCTGATTCCACCTCAAGCAAGAAGGTTGTTCCTATGTTGCCAATTGCTGAGCCCCCAATGACTCCTTTGCATGAGTTGAGTAGGTCTATTCCAGATTTTGTAAAATTTGGTCCTATTTTGCCCAAGAGTGCTGGGTTTTCTTTGGCACCAAGATCTAAAGATGGTTTGAATGAAACAATCAGAGAGAATTTATCTTCCAGCCATTCAAAGGAGGAGAAATCATCCATATGGGGTGCTAAGGAGAGCATCATTGAAGAGAATGAAGATGATTCAGATTCTGAGCTTGATGATGATGCATCTGTGGACTCTGATAACAAAAGCAATATTTTTCTCCCTGGAATGAAGATGACCAATGATGAGGATATTGAGCCAAAAGTGGATCTTCTATGCCAGAATAATCAAATACATTCCCCTAATATCTTCTCTCCCTTGGATTCCCCAAGAACTGCTCCAAATAATTCATCTACAAATCCTGATATACGTAGTAAAAGAGAAGTTAAGTTTTTGCGCTTACTGTCTAGGCGCAGGGACTCAACTATTTCTGACTCTTTATCAGTATCTTCAGACATGAGCACTGATCACATTTTCAACACTGATAATGAAGTTATGGTCTTGAAGAATATTCAGAGGAAAAATGATAACCAAACACCAAGTATGAATCATGACAATGAGAGTAGCCTGGTACTGAATGACAGTTCCCTTTGTGAAAGTGATGAGGGATATCAAAGCTTTACTTCATTGCCAAAATTAGAGAAGCTGAGTATTGGATCAAAACCACCCAAAGATTTTGTCTGCCCAATCACAGGTCAGATATTTTGTGATCCTGTCACCCTTGAAACAGGCCAGACCTATGAAAGAAAAGCAATTCAAGAGTGGCTCAAAACAGGAAACACAACATGCCCCATCACACGACAGGCTCTTTCTGCAAGCACATTACCCAAAACAAACTATGTTTTGAAGAGATTGATTACATCATGGAAAGAACAGAATCCTGAACTAGCTCAAGAATTCTCAAATGCTAATACACCAAGGGGTTCTTCCTGTTCTCCCTCTGCAAAAGACATCCCAATGCTCTCCACCAGGCATCGAAGAACTGATTCACCAAGCCATAAGAACAAAGAAGATTATATTAGACAAAGGAGCAACAGATTTATGCGAGTTGCTGTCACATCATCTCCAACTAGTGTGCTATCTCAAGCAGCAGTTGAAACAATTTTGAATTCCTTGAAACCTCACATTTCAAGTCTCTGTACATCAGAAAACTTGAAAGAATGTGAAGAAGCTGTATTGGAAATAGCAATATTGTGGAAGGATTCAAAGACTGATCCTCAGATTCATTCTTATTTATCAAAACCAACTGTCATAAATGGTTTAGTGGAAATTCTTTCAGCTTCTCTGAATAGGGAAGTTCTGAGGACATCAATTTATATTCTTTCCGAGCTAATTTTTGCAGATGAAAGTGTTGGAGAAACACTTAATAGTGTAGATTCTGATTCTGATTGCTTGGCTACTCTACTGAAGAATGGTTTGGCTGAGGCTGCTCTTCTTATTTACCAACTACGGCCAGTTTTTGCTAAGCTTTCAGCACATGAACTTATACCCTCTTTGGTTCAGGTGATCCAGAACAAAAATGAGGAGTTAGATGATTTTCAGTTAGTTATAGACCCCAAAGATGCTGCAGTAGCGATTCTTGAGCAGATTTTAACAGGAGGGGATGAATATAGCAGGTCCCTTAATGCTTTGAATGTTATTTCAGCAAATGGAATTCCAGCCTTAGTGAAGTATTTGGAGAGGATGGAAGGAAGGAGGTCTGTTGTTTCCATACTTTTGTGTTGTATGCAAGCTGAAAAAAGTTGCAAGAGCTTGATAGCAAACAGAATAGAATTGTCTCCTGTTCTTGAATTATTCCATGCTGGAAATGATAGTGTGAGAGGCATCTGTGTGGAGTTTCTCTCAGAACTGGTTCAATTGAATAGAAGGACGTTCAGCAACCAGATATTACAGATAATAAAGGATGAAGGAGCATTCAGTACAATGCATACATTTCTTGTATATCTTCAGATGGCTCCAATGGAGCATCAACTTGCTGTTGCCAGTCTTCTTCTTCAGCTTGATCTTCTGGTTGAGCCACGAAAGATGAGCATTTACAGGGAAGAAGCTGTAGAAACACTGATTGAAGCACTTTGGCAAAAGGACTTCTCAAATGCTCAAATGAAGGCTGTAGATGCTTTACTATTTCTTATTGGACATATCACTTCCTCTGGAAAGTCATATACTGAAGCCTGGCTGCTCAAGATTGCAGGATTTGATCAACCTTACAATGCTTTGATGAAGGTCGAGCAGTCGGGACAGTATGACAATGATTTGATGGAAACAATGGAGGATGAAAAAAATGCTATGTACTCTTGGCAGAAAAGATTGGCTTTCGTGCTTTGCAATCATGAAAACGGTTCAATATTTCAAGCTTTGGAAGAATGCCTGAGGAGTAATTCCTTAAAGATGGCAAAATCTTGCCTTGTTCTTGCCACATGGCTCACACACATGCTCTCTACTCTTCCTGACACCGGTGTAAAAGATGTTGCTCGCAAATCCTTGTTTGATAAACTTATAAATGCCCTCCAGTCATCCAAGAACCAGGAGGAAAAGATCTTGGCCACCCTAGCATTGAAGACATTCATTAGTGATCCAATTGCTCAGGAAGCACTTGGAGTTTACGCTAAAAGAATCTTTAGAACCTTGAGGAAGCTGAAGAAATATTCAGTGGTGGCAGTTGACATCATGAAAGCCATTCTAAACTTAAACTCTGTTGATGTGACAGAATTATGGAGTTGTAAAGAAGTAGTTGAGTTAGATTTAAGCATAAATGGAGAGGTGCTTTCTTTGCTTTATCTTAATGGTCAAGTCTTGAGCGGACACTCTGATGGAACTATCAAGGTATGGGATGCAAGGAAGAGAATACCAAGAGTGATTCAAGAAACTCATGAGCACACAAAAGCTGTAACATCTCTTTGTTCTTCGGATGATAGACTATACAGCGGCTCCTTAGACAAAACCATCCGGGCTTGGACAATTAAACCTGATGGGATTAAATGTATAGATGTTCATGAAGTTAAGGAGGCAGTGTACGAGCTGACAGCCAATGCTAAATTGGCATGCTATGTGTCTCAAGGAACTGGAGTTAAGGCTTTTAATTGGTCAGAGGCTCCAAAGCTCATTAATTTCAACAAGTATGTGAAATGCCTTGCTGTTGCTGAGGACAAACTGTATTGTGGTTGCTCTGGTTACAGCATCCAGGAGGTTGACTTGTCCAAACATATATCAAATTCATTCTTCTCTGGTACAAGAAAATTGTTGGGAAAACAAACCATACACTCCCTTCAAATTCATGATGGTTTCCTCTTTGCTTGTGGTTCTTCTGTTGATGCAACAGCAGGAAAGATATTTTCACTTTCTTCCAAAATGGTGGTGGGATCACTCTCCACTGGACTTGACATCCATCGTATAGCCATAAACAGTGACTTCATATTTGCTGGTACAAAATGTGGCACCATTGAGGTTTGGCTAAAAGATAAGTTCACCCGGGTTGCTTCCATCAAAATGGCTGGTGGTCACACAAAAATTACATCATTAGTATCAGATGCAGATGGTATGATGCTTTTTGTTGGTTCCTCTGATGGCAAGATCCAGGTTTGGGCTTTGGATTAA 4461 0.3957 MAGNFRFMMDQKDIVRFLTTTVDSFIQDRLINKEQRSQHKEQCAERLAAEDGSCDKDTEVEYSDQAVLANLDWGIEALEEAINTYNMETKLARLDYAEKMLQVCAMLNPKQKTAGVPNSYLSAWAHLNLSYLWKLRNNIQNCIFHALEMFNVDPFFSRIDFAPELWKNLFLPHMSSIVGWYSEERHKLMMEVIPDSSDMSFTADFDQFFNESLVFSMRPPQLDKLQKLEQLYGESLNENTRLYAKYYNDCVNSDSTSSKKVVPMLPIAEPPMTPLHELSRSIPDFVKFGPILPKSAGFSLAPRSKDGLNETIRENLSSSHSKEEKSSIWGAKESIIEENEDDSDSELDDDASVDSDNKSNIFLPGMKMTNDEDIEPKVDLLCQNNQIHSPNIFSPLDSPRTAPNNSSTNPDIRSKREVKFLRLLSRRRDSTISDSLSVSSDMSTDHIFNTDNEVMVLKNIQRKNDNQTPSMNHDNESSLVLNDSSLCESDEGYQSFTSLPKLEKLSIGSKPPKDFVCPITGQIFCDPVTLETGQTYERKAIQEWLKTGNTTCPITRQALSASTLPKTNYVLKRLITSWKEQNPELAQEFSNANTPRGSSCSPSAKDIPMLSTRHRRTDSPSHKNKEDYIRQRSNRFMRVAVTSSPTSVLSQAAVETILNSLKPHISSLCTSENLKECEEAVLEIAILWKDSKTDPQIHSYLSKPTVINGLVEILSASLNREVLRTSIYILSELIFADESVGETLNSVDSDSDCLATLLKNGLAEAALLIYQLRPVFAKLSAHELIPSLVQVIQNKNEELDDFQLVIDPKDAAVAILEQILTGGDEYSRSLNALNVISANGIPALVKYLERMEGRRSVVSILLCCMQAEKSCKSLIANRIELSPVLELFHAGNDSVRGICVEFLSELVQLNRRTFSNQILQIIKDEGAFSTMHTFLVYLQMAPMEHQLAVASLLLQLDLLVEPRKMSIYREEAVETLIEALWQKDFSNAQMKAVDALLFLIGHITSSGKSYTEAWLLKIAGFDQPYNALMKVEQSGQYDNDLMETMEDEKNAMYSWQKRLAFVLCNHENGSIFQALEECLRSNSLKMAKSCLVLATWLTHMLSTLPDTGVKDVARKSLFDKLINALQSSKNQEEKILATLALKTFISDPIAQEALGVYAKRIFRTLRKLKKYSVVAVDIMKAILNLNSVDVTELWSCKEVVELDLSINGEVLSLLYLNGQVLSGHSDGTIKVWDARKRIPRVIQETHEHTKAVTSLCSSDDRLYSGSLDKTIRAWTIKPDGIKCIDVHEVKEAVYELTANAKLACYVSQGTGVKAFNWSEAPKLINFNKYVKCLAVAEDKLYCGCSGYSIQEVDLSKHISNSFFSGTRKLLGKQTIHSLQIHDGFLFACGSSVDATAGKIFSLSSKMVVGSLSTGLDIHRIAINSDFIFAGTKCGTIEVWLKDKFTRVASIKMAGGHTKITSLVSDADGMMLFVGSSDGKIQVWALD* 1487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02262 1486 SUPERFAMILY WD40 repeat-like 1218 1485 IPR036322 GO:0005515
Rops6g02262 1486 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 4 1485 - -
Rops6g02262 1486 Pfam WD domain, G-beta repeat 1246 1274 IPR001680 GO:0005515
Rops6g02262 1486 Pfam WD domain, G-beta repeat 1454 1483 IPR001680 GO:0005515
Rops6g02262 1486 Pfam WD domain, G-beta repeat 1218 1233 IPR001680 GO:0005515
Rops6g02262 1486 ProSiteProfiles U-box domain profile. 510 585 IPR003613 GO:0004842|GO:0016567
Rops6g02262 1486 Gene3D - 659 936 IPR011989 -
Rops6g02262 1486 ProSiteProfiles Trp-Asp (WD) repeats profile. 1452 1486 IPR001680 GO:0005515
Rops6g02262 1486 SUPERFAMILY RING/U-box 510 583 - -
Rops6g02262 1486 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 500 593 IPR013083 -
Rops6g02262 1486 ProSiteProfiles Trp-Asp (WD) repeats profile. 1220 1233 IPR001680 GO:0005515
Rops6g02262 1486 Gene3D - 1183 1486 IPR015943 GO:0005515
Rops6g02262 1486 MobiDBLite consensus disorder prediction 389 411 - -
Rops6g02262 1486 ProSiteProfiles Trp-Asp (WD) repeats profile. 1245 1277 IPR001680 GO:0005515
Rops6g02262 1486 SUPERFAMILY ARM repeat 624 1149 IPR016024 -
Rops6g02262 1486 SMART Ubox_2 514 578 IPR003613 GO:0004842|GO:0016567
Rops6g02262 1486 Pfam U-box domain 512 582 IPR003613 GO:0004842|GO:0016567
Rops6g02262 1486 SMART WD40_4 1443 1484 IPR001680 GO:0005515
Rops6g02262 1486 SMART WD40_4 1404 1440 IPR001680 GO:0005515
Rops6g02262 1486 SMART WD40_4 1195 1233 IPR001680 GO:0005515
Rops6g02262 1486 SMART WD40_4 1238 1275 IPR001680 GO:0005515
Rops6g02262 1486 MobiDBLite consensus disorder prediction 338 367 - -
Rops6g02262 1486 CDD RING-Ubox_PUB 512 564 IPR045210 -
Rops6g02262 1486 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1452 1486 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02262 Rops-Chr6 41246595 41253688 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02262 501 903 U-box Gene Family AT1G23030 25.899 1.57e-18 89.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02262 - - gmx:100776142 2546.93