Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02257 ATGACAACAGCAGAAGAAACTTCAAGTTTGAAACTGTTGAGCCAACATCTCTTAGAAGATATTTCAGACTCCTTTCTCACCAATCTCATTCCTGTAAAACTTGAAGACCCATCATCAGAACTTGATTTGGATTCAAGTTTTTCAGAACAACGCAGCTTCTTCTGCACTTTTCTTGAATGCTTTGGTTTTGAAGCAGATACAGAAGTTGTGGATCTCACTCCTGATAAAGTCCAAAACTCCATTGCAGAAAGTCCCTCAGGGGAAACACAGAAGTCCAATTCACCAGAACCAGTGGTGTCAGGGAAAAGGAAACCAACAAGTTATGAGGCAAGGCGTTATAGAGGAGTAAGGAGAAGGCCATGGGGAAAGTTTGCTGCAGAGATCCGTGACCCTACAAGGAAAGGGACAAGGGTGTGGTTAGGAACATTTGATAGTGAGATTGATGCTGCAAAGGCTTATGATTGTGCTGCTTTCAAGATGAGGGGTCAGAAAGCCATATTGAATTTCCCTCTTGAGGCTGGAGAGTCTAATCCAAATCCTAACTTTTGTGGCAGAAAAAGGAGAAGATAA 570 0.4228 MTTAEETSSLKLLSQHLLEDISDSFLTNLIPVKLEDPSSELDLDSSFSEQRSFFCTFLECFGFEADTEVVDLTPDKVQNSIAESPSGETQKSNSPEPVVSGKRKPTSYEARRYRGVRRRPWGKFAAEIRDPTRKGTRVWLGTFDSEIDAAKAYDCAAFKMRGQKAILNFPLEAGESNPNPNFCGRKRRR* 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02257 189 MobiDBLite consensus disorder prediction 79 100 - -
Rops6g02257 189 PANTHER DNA-BINDING DOMAIN 86 174 IPR044808 GO:0003700|GO:0009873
Rops6g02257 189 SMART rav1_2 112 176 IPR001471 GO:0003700|GO:0006355
Rops6g02257 189 Pfam AP2 domain 112 162 IPR001471 GO:0003700|GO:0006355
Rops6g02257 189 PRINTS Ethylene responsive element binding protein signature 152 172 IPR001471 GO:0003700|GO:0006355
Rops6g02257 189 PRINTS Ethylene responsive element binding protein signature 113 124 IPR001471 GO:0003700|GO:0006355
Rops6g02257 189 FunFam Ethylene-responsive transcription factor 2 111 172 - -
Rops6g02257 189 Gene3D AP2/ERF domain 111 172 IPR036955 GO:0003700|GO:0006355
Rops6g02257 189 CDD AP2 120 170 IPR001471 GO:0003700|GO:0006355
Rops6g02257 189 ProSiteProfiles AP2/ERF domain profile. 112 170 IPR001471 GO:0003700|GO:0006355
Rops6g02257 189 SUPERFAMILY DNA-binding domain 112 172 IPR016177 GO:0003677
Rops6g02257 189 MobiDBLite consensus disorder prediction 79 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02257 Rops-Chr6 41146380 41147236 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02257 1 189 AP2-EREBP Transcription Factor Family AT5G07580 42.857 5.51e-44 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Rops6g02257 AP2 1.5e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02257 - - pvu:PHAVU_007G135900g 253.062