Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02254 ATGAACGACAACACTACCATAATCGAGCACTGGAGCGACTTGCCGTTTATGATCGACGACACTTACGACATGATCATCTTCAACTCCCTACGCCATGCCGTTTCACAGGGTTGGTCTCCGTCCAATGACACAACACCAAAACCGGAATCAAACGACGCTCCAGCGAGACCAACGCAAGAAAACAGTTCCCTCCTTTACACGAACGACAATTCAAATGCTGTCGTTTCGCGGCAGAAGAAGAAGAGTTTGGGAACGCACTACAGAGGAGTGAGGCAAAGACCATGGGGAACGTTCGCTGCTGAGATTCGCGACCCGGCTCGAAACGGCGCGAGGGCGTGGCTCGGCACTTACGAAACGGCTGAGGAGGCGGCTTTGGCTTATGATCGAGCCGCATTCAAGCTACGCGGCTCGAAGGCTTTGCTTAACTTCCCGCACCGAATAGGCTCTGATGAGCCGCCTCCGGTGAGAGTCACGGCTAAGCGCCGTCACCGCCGCCGGCTAAGGCTGTGA 510 0.5529 MNDNTTIIEHWSDLPFMIDDTYDMIIFNSLRHAVSQGWSPSNDTTPKPESNDAPARPTQENSSLLYTNDNSNAVVSRQKKKSLGTHYRGVRQRPWGTFAAEIRDPARNGARAWLGTYETAEEAALAYDRAAFKLRGSKALLNFPHRIGSDEPPPVRVTAKRRHRRRLRL* 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02254 169 Gene3D AP2/ERF domain 75 146 IPR036955 GO:0003700|GO:0006355
Rops6g02254 169 Pfam AP2 domain 85 136 IPR001471 GO:0003700|GO:0006355
Rops6g02254 169 SMART rav1_2 86 150 IPR001471 GO:0003700|GO:0006355
Rops6g02254 169 CDD AP2 85 145 IPR001471 GO:0003700|GO:0006355
Rops6g02254 169 FunFam Ethylene-responsive transcription factor 2 85 145 - -
Rops6g02254 169 ProSiteProfiles AP2/ERF domain profile. 86 144 IPR001471 GO:0003700|GO:0006355
Rops6g02254 169 PRINTS Ethylene responsive element binding protein signature 87 98 IPR001471 GO:0003700|GO:0006355
Rops6g02254 169 PRINTS Ethylene responsive element binding protein signature 126 146 IPR001471 GO:0003700|GO:0006355
Rops6g02254 169 MobiDBLite consensus disorder prediction 36 71 - -
Rops6g02254 169 PANTHER DNA-BINDING DOMAIN 50 150 IPR044808 GO:0003700|GO:0009873
Rops6g02254 169 SUPERFAMILY DNA-binding domain 86 146 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02254 Rops-Chr6 41108057 41108566 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02254 4 162 AP2-EREBP Transcription Factor Family AT2G44840 55.000 5.70e-53 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Rops6g02254 AP2 2.9e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02254 K09286 K13432 gmx:102664672 204.527