Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02247 ATGGAGGGTACATTTCCCAAGATGGAAATCTTCACCCAAAAGAGATTGCCAACTTGTTTGCAAGAAATGGCAACAGGATCAAAGTTTTTGGACGATACAATTATAAGAGGTTCTCACTCTCTCACTGCTTCTCATCATGTTCATGTATTAAGAAGTGAGGTAAACTCATCAATAGCATCACCTGAAAAGCTTTTCTCGTGTTCAAATTCAATTTCAATGAAAGAAGAGGTACCTTTAGCTGCTTTGAATAGTCATATCCCTGCAAAGTTCAATGATCATGAAGACATGGAGAATGGGAAAGCTAAAAATCAATCCATTTCTGGATTCAATTCTATCTCCACTTCAGGCGTCTCAGCCTCAGATATAAAACATAGCTCCATTCCTCTAAATCTTTTGGAAACTCTCCCAGTATTAACCATAGCACCAGTTTCTGCTGAGCCAGCAGCTTCTTTAGCTTCTTCTTCTTCTTCTGCTACACCCAAATTTCCAAACTTGACTTTGTTTTTACAGGAGCCCTCCATGCTGTACTCATCATCCTCACATATCAAAAGTGATGAAGTCATGTCAGCAACTTCAAATTCCACATATCCTGTGTCCCAGTTTGGCCAAACCCAGCATCATCAAGCAGGTAGCGATTCACACAAAATGAATAAGAATCCAACAAATATGCAGCATAAGTTTTTCAATGACAATTGGTTGAGTACCACTAGGACTCAACCTTTGAAGTATGCTGCAAGAGGCAAGCTGTTTAAAGGGGTGAGACAGAGACATTGGGGGAAATGGGTTGCTGAGATTAGATTACCAAGAAACAGGACAAGGGTTTGGCTTGGGACTTTTGACACAGCTGAAGATGCTGCCATTGCATATGACACAGCAGCATATATACTAAGAGGAGAATATGCTCAGTTGAACTTTCCAGATCTAAAGCATGTAATTCAGGCCAATTCTTTGAATGGAACTACTGCTGCACTTGTGGAGGCAAAACTACAAGCAATATCACAAGGTGTTTCTTCTTCTCATAGGAAGTCCACTGATTCATCAACAGGGTCAAACAATAAGCACACTGATGAGAATGGCAAAATGAAAAGTGAAAATGGCAAGGATTCTTCAACCATAAAGGGGTGGCGGTTTGATATAGAGAGCAAGGTTGAAGCTAACACAACTGAGAAAAGCAAAAGTACACATCATGAGATATCAGATGTGGAAGCTGTTCAGTTAAGTAGAATGCCCTCCTTAGACATGGACATCATTTGGGATGAACTTTTAGTCTCTGATTCATGA 1281 0.4012 MEGTFPKMEIFTQKRLPTCLQEMATGSKFLDDTIIRGSHSLTASHHVHVLRSEVNSSIASPEKLFSCSNSISMKEEVPLAALNSHIPAKFNDHEDMENGKAKNQSISGFNSISTSGVSASDIKHSSIPLNLLETLPVLTIAPVSAEPAASLASSSSSATPKFPNLTLFLQEPSMLYSSSSHIKSDEVMSATSNSTYPVSQFGQTQHHQAGSDSHKMNKNPTNMQHKFFNDNWLSTTRTQPLKYAARGKLFKGVRQRHWGKWVAEIRLPRNRTRVWLGTFDTAEDAAIAYDTAAYILRGEYAQLNFPDLKHVIQANSLNGTTAALVEAKLQAISQGVSSSHRKSTDSSTGSNNKHTDENGKMKSENGKDSSTIKGWRFDIESKVEANTTEKSKSTHHEISDVEAVQLSRMPSLDMDIIWDELLVSDS* 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02247 426 MobiDBLite consensus disorder prediction 335 354 - -
Rops6g02247 426 FunFam Ethylene-responsive transcription factor 2 248 307 - -
Rops6g02247 426 MobiDBLite consensus disorder prediction 335 371 - -
Rops6g02247 426 CDD AP2 248 308 IPR001471 GO:0003700|GO:0006355
Rops6g02247 426 Gene3D AP2/ERF domain 249 307 IPR036955 GO:0003700|GO:0006355
Rops6g02247 426 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 123 421 - -
Rops6g02247 426 SMART rav1_2 249 312 IPR001471 GO:0003700|GO:0006355
Rops6g02247 426 MobiDBLite consensus disorder prediction 355 371 - -
Rops6g02247 426 ProSiteProfiles AP2/ERF domain profile. 249 306 IPR001471 GO:0003700|GO:0006355
Rops6g02247 426 SUPERFAMILY DNA-binding domain 249 307 IPR016177 GO:0003677
Rops6g02247 426 Pfam AP2 domain 250 298 IPR001471 GO:0003700|GO:0006355
Rops6g02247 426 PRINTS Ethylene responsive element binding protein signature 272 288 IPR001471 GO:0003700|GO:0006355
Rops6g02247 426 PRINTS Ethylene responsive element binding protein signature 250 261 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02247 Rops-Chr6 40945189 40946469 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02247 141 421 AP2-EREBP Transcription Factor Family AT4G13620 45.238 8.25e-71 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Rops6g02247 AP2 2.1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02247 - - gmx:100820013 569.696