Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02240 ATGAGTAATGAGGATTCTGGCATTTCAGGCAAGCAATATAGAGATACAGAGAGTGTTGGGTTTAGCGATAGCATCCCTTCTGATAAAGAAGAAGACTATATATGTCTACAGACGGGTGAAGAATTTTCTGCTGAGTTCTTACGCGATCGGGTTCCTTTAAGGAGATTTCCTGGCATAACTGATGCAGACCAGCGCATGCCAAACAGATTGGATTTTAATATCAATAATAATAATAATAATTACCAGCTGGTCTATGAGGATCTAAAGCATGTTCTTGGGCTAAGGAGAACGAATTCTGATAGTCACTCAGATGTGTCTTTAGGCAGAGGGTATATTGCTGAAGCCGACGACAGGGCTTATCCTAGTAATTTGGGCAGATACCAGTATGAACATGGCGGTATCAGACAAGCATCAGGTACATTTTCCAGACAATTATCAGATAAGTTTTCTGAAGGATTTTGTTGTGATCAAGTTACTTCAGGACCAAATACTCCATCTATTTGTGTCAATGAGTCTCCTCCTTCATGCCATCCTTATGGATCAGTATTCTTAGAAGGTTCTTTCCATAAGAAGATAAAGTTTCTGTGTAGTTTTGGAGGCAGAATACTACCGAGGCCAAATGATGGGAAGCTCAGATATGTGGGTGGAGAGACTCGGATTATATCAATCAGGAAGAACATCACATGGGAGGAACTTATGAGGAAGACTTCTGCTATTTGCAATCAAAGTCACATTATCAAATACCAGCTTCCTGGAGAGGATCTTGATGCTCTTATTTCTGTTTGTTCCGATGAGGATCTTCATCATATGATCGAGGAGTATGAAGAGCTTGAAAGAGCCGGAGGCTCTCAACGACTGAGGATTTTTCTCATACCTTCAAATGAATCTGAGAGTCCAAGTTGTAGTGAATCAAGAGTCAATCAGCCAAGTGATGCTGATTATCATTATGTTGTTGCTGTTAATGGTATGCTGGATCCAAGTTCACGAAAGAACCTTAGTGGGATGAGTTTGGCAAGCCACACAAGCCAGTTTGTAAATAACTCTGATTATAACAGTCCACATTTCCACAGAGACTCATCCACATCTGCATTTGCTTCAGAGGTGAAGGATTGCAGCCCTACCTCTCCAAATTTGGCAGGCTTACTCTCAAAACCTCGTCCCCAATTTTTAACAGCGCTGAAGGTAGCAGGCAAGTCATTTAATCAAACGCCTCCTTTATCTCCCATTTGTGAACAGCCTAAAGATCCTCCTAAAATTTATAAGGATCGACCATATAATGTTGTTAGCGAAGGCACTATTCCCTTTGTTATGGAAAAAGTTCCACTTGACAACTCTTTGTATGTAGACAGTACCAGTTATGTTGATCCAAATGCATATTATAACAATCTTGCTCAAGGGATTCCATGCGTGAATTACCATCCTAGTAATCAATGTCCACTGGAGTCTGACCAGGTCAAGAAACCTGGTAATGATTTTCATTTCCACAGACGAAACAACAGTAAAGATTTTGTCTCTTCTCCAATTTGTAGTCAAACTGATAGGAGATTCGAGAGACCTCTAGTTACCAATGAAGGTTCATATCATTTTAACAAGATTGTCTCTCATCCTCATGAGTCATCAAGTTTATTCTCAGTGTCTGATGATAGAGAGAGATCTCAGTACAGAATGTTGCATGCACTTTCTGACTCAACACTTCAGGAGAATGATGAGAACTACAAAGTTCGGTTGCAATTTCCACTTAGGATAGAGAGAGAAAAACTGTCGTCACTGGAAACTTCAAGTTCTTTGGAAGAATGTTCGATGCAGCCAGGAGAGAAAATTGATGGGAAAGAACACATGGCTAAGTATCAAAACTTGCCCACTTTTGGAATGATTGATAGTCGCAAGAGAGTGTCAGAATGTTCTGATAAAAGCACTGACTGGTTTGATGAAAAAGCTGGAGCTATGTCAAGAGACCGGCATTCCCAGTACATCTACTACCCACATGGTGTTTGCTCATCTTCACCAGATTTACAAAGCAGTGAATGCAACGTATCTGCTGCTTCATTTATCTCTTTAGAATCCACAAGAAACCTGACAGAACTACCACATGATCTGCCATTTGACACAATTGCTGCTGAGTTTTCCATGAGGAGCCAAAATTCATCAACGCATCACCAATATGCTATATCGGAGACAAAAGACAGTCAACCACTTCCCCCTGGTTCTTTTGAGTCACAACCTATTGAGTCCCAAACTGGCATAGAGTCCAAACCACCTACCTCATATACAGACATGGCTTCTTCTTCACTAAGAGAGGTTGTTATCCCTGATAAGGATCCTGCATGCTACCTGCGCCAAAATGAAGAAAACAGAGTCATTAACAAGCAATCTTCTGAATACATTGATGAATTTTATGTCAACAAGCCAGAATCAGTGGCTGTTGTCAAGGGGCCAACTGATTACATTTCTTCAGGTATCCAGTCACGCTTACAAGTTGCCTCAAATGTAGGTGAAGAGAATGAAGTTGAACCTACATCTCCTAAAAAGGAAGGAGTAGAGCACGTTAATCCAGAATCTGAAAGTAAGCTTCCAAAAGATGATAGTGGAAACTTCAGTAAGCCTACTGGTGATTCAGCAATCGCTGAAATAGAGGCTGAACTTTATGGTTTACAGATTATTGACAATGGTGATATTGAAGAACTACAAGAATTAGGATCTGGTACCTTTGGAACTGTTTATCACGGGAAATGGAGGGGAACAGATGTTGCAATTAAGAGAATAAAAAGTAGTTGTTTCACTGGTAGATTGTCAGAGCAAGAGCGATTGACTAAAGATTTTTGGAGAGAGGCACGAATTCTGTCAACTATTCACCATCCAAATGTGGTAGCATTTTATGGGGTAGTTCCAGATGGCCCAGGTGAAACATTGGCAACTGTAACAGAATACATGTTGCATGGATCACTGAGGAATGTTCTCTTGAAGAAAGAGAAAGTTCTTGACCGTCGTAAAAGGGTCATGATTGCAATGGATGCAGCCTTTGGCATGGAATATTTGCATTTGAAAAATATTGTTCATTTTGATTTGAAGTGTGATAATTTACTTGTCAATCTGGGTGATCCTGAGCGACCTGTATGTAAGGTTGGAGATTTTGGCCTATCAAGAATAAAACGCAACACACTTGTTTCTGGTGGTGTCAGAGGAACCCTTCCATGGATGGCACCAGAATTACTGGATGGTAACAATATTAGGGTGTCTGAGAAGGTTGATGTTTTCTCGTTTGGCATTGCAATGTGGGAAATCTTGACGGGGGAAGAACCGTATGCTAACATGCACTGTGGTGCTATCATAGGAGGTATTGTCAATAATACGCTCAGGCCTCCAATTCCAAAACGCTGTGATTCAGAGTGGAAAAAGTTGATGGAAGAGTGCTGGAGTCCTGATCCTGCAGCCAGGCCATCCTTCACTGAAGTTAAAGATAGACTTCGCAACATGTCAGCTGCACTGCAGAAAAAGAGACATAATCGATGA 3510 0.4088 MSNEDSGISGKQYRDTESVGFSDSIPSDKEEDYICLQTGEEFSAEFLRDRVPLRRFPGITDADQRMPNRLDFNINNNNNNYQLVYEDLKHVLGLRRTNSDSHSDVSLGRGYIAEADDRAYPSNLGRYQYEHGGIRQASGTFSRQLSDKFSEGFCCDQVTSGPNTPSICVNESPPSCHPYGSVFLEGSFHKKIKFLCSFGGRILPRPNDGKLRYVGGETRIISIRKNITWEELMRKTSAICNQSHIIKYQLPGEDLDALISVCSDEDLHHMIEEYEELERAGGSQRLRIFLIPSNESESPSCSESRVNQPSDADYHYVVAVNGMLDPSSRKNLSGMSLASHTSQFVNNSDYNSPHFHRDSSTSAFASEVKDCSPTSPNLAGLLSKPRPQFLTALKVAGKSFNQTPPLSPICEQPKDPPKIYKDRPYNVVSEGTIPFVMEKVPLDNSLYVDSTSYVDPNAYYNNLAQGIPCVNYHPSNQCPLESDQVKKPGNDFHFHRRNNSKDFVSSPICSQTDRRFERPLVTNEGSYHFNKIVSHPHESSSLFSVSDDRERSQYRMLHALSDSTLQENDENYKVRLQFPLRIEREKLSSLETSSSLEECSMQPGEKIDGKEHMAKYQNLPTFGMIDSRKRVSECSDKSTDWFDEKAGAMSRDRHSQYIYYPHGVCSSSPDLQSSECNVSAASFISLESTRNLTELPHDLPFDTIAAEFSMRSQNSSTHHQYAISETKDSQPLPPGSFESQPIESQTGIESKPPTSYTDMASSSLREVVIPDKDPACYLRQNEENRVINKQSSEYIDEFYVNKPESVAVVKGPTDYISSGIQSRLQVASNVGEENEVEPTSPKKEGVEHVNPESESKLPKDDSGNFSKPTGDSAIAEIEAELYGLQIIDNGDIEELQELGSGTFGTVYHGKWRGTDVAIKRIKSSCFTGRLSEQERLTKDFWREARILSTIHHPNVVAFYGVVPDGPGETLATVTEYMLHGSLRNVLLKKEKVLDRRKRVMIAMDAAFGMEYLHLKNIVHFDLKCDNLLVNLGDPERPVCKVGDFGLSRIKRNTLVSGGVRGTLPWMAPELLDGNNIRVSEKVDVFSFGIAMWEILTGEEPYANMHCGAIIGGIVNNTLRPPIPKRCDSEWKKLMEECWSPDPAARPSFTEVKDRLRNMSAALQKKRHNR* 1170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02240 1169 ProSitePatterns Protein kinases ATP-binding region signature. 898 919 IPR017441 GO:0005524
Rops6g02240 1169 SMART PB1_new 206 293 IPR000270 GO:0005515
Rops6g02240 1169 Pfam Protein tyrosine and serine/threonine kinase 894 1155 IPR001245 GO:0004672|GO:0006468
Rops6g02240 1169 SMART serkin_6 892 1161 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g02240 1169 MobiDBLite consensus disorder prediction 836 861 - -
Rops6g02240 1169 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 885 979 - -
Rops6g02240 1169 CDD STKc_MAP3K-like 898 1155 - -
Rops6g02240 1169 MobiDBLite consensus disorder prediction 1 23 - -
Rops6g02240 1169 PRINTS Tyrosine kinase catalytic domain signature 974 987 IPR001245 GO:0004672|GO:0006468
Rops6g02240 1169 PRINTS Tyrosine kinase catalytic domain signature 1126 1148 IPR001245 GO:0004672|GO:0006468
Rops6g02240 1169 PRINTS Tyrosine kinase catalytic domain signature 1082 1104 IPR001245 GO:0004672|GO:0006468
Rops6g02240 1169 PRINTS Tyrosine kinase catalytic domain signature 1011 1029 IPR001245 GO:0004672|GO:0006468
Rops6g02240 1169 Gene3D Phosphorylase Kinase; domain 1 885 979 - -
Rops6g02240 1169 MobiDBLite consensus disorder prediction 715 759 - -
Rops6g02240 1169 SUPERFAMILY CAD & PB1 domains 207 299 - -
Rops6g02240 1169 Pfam PB1 domain 207 291 IPR000270 GO:0005515
Rops6g02240 1169 Gene3D - 210 293 - -
Rops6g02240 1169 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1017 1029 IPR008271 GO:0004672|GO:0006468
Rops6g02240 1169 SUPERFAMILY Protein kinase-like (PK-like) 880 1154 IPR011009 -
Rops6g02240 1169 CDD PB1_UP2 195 291 - -
Rops6g02240 1169 ProSiteProfiles Protein kinase domain profile. 892 1162 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g02240 1169 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 980 1169 - -
Rops6g02240 1169 PANTHER SERINE-THREONINE PROTEIN KINASE 241 1156 - -
Rops6g02240 1169 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 211 293 - -
Rops6g02240 1169 Gene3D Transferase(Phosphotransferase) domain 1 980 1169 - -
Rops6g02240 1169 MobiDBLite consensus disorder prediction 828 870 - -
Rops6g02240 1169 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02240 Rops-Chr6 40863764 40870251 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02240 33 339 MAP Kinase Kinase Kinase AT1G16270 39.159 1.38e-46 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-6 Rops6g02240 PK_Tyr_Ser-Thr 7.1e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02240 - - gmx:100810711 1741.09