Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02239 ATGCAAGAGTACAATTGCAATACTTCTGCAAATAGAACTCAGTGCCTTTTTGAAGTCCCTGTAGCCACCCCTCTCTCACCAACGGAATCGGGTGCCGCAACAAAACTCGACGGCGACGACGGAGATGGAAAAGAAAAGGAAGACGACCAAGAGTTAAAGGGAGTTGATGTAGGAGAAATAGAAGGCACAAAAGGAGAGGATGAGAAGCAATGGCTTTGGGAGCTTAGTGTTCAAATTTCGATGAAGATGGTTCCTTGGGGTGGCATCGGTTGTTGTTTGAGTGCTGCTGCTCTTTACCTTCTTGCCAGAAGCAGTGGCAGGGGTGCGGAAATTCTTAAATCGGTTACCCGGGTCAATCAGTTGAAGGAACTTGCACAATTGTTAGATGCGGAAATATTACCCTTGGTTGTTTCAATTTGTGGAAGAGTTGGTTCTGAAACCCCAATTAACTGCGAGTTCAGTGGTTCAAGAGGTGTAATAGTTGAAGAAACGAGCAACATTTTCTCAAACACAATGATGCTGGATCCTGGATCCTGGATACAAGATTCTGCGTTAATGCCATCCATGATTAAAGAGGTTCCTTGGTATCTGGATGATGGGACGGATCGTGTGCATGTGGTTGGAGCTCGGGATGCCATTGGTTTTGTATTACCTGTTGGAAGTGAGGCATTTGAAGAGTCAGGTCGATCACTTGTACGTAGAATATTAGATCATCTCCGAGGTCTCAAGATGCTTGGAGTTAAGAGGATTGAGCGAGTACTTCCAGTTGGAACTTCCTTGACTGTTGTTGGTGAGGCTGCTAAAGATGACGTTGGGACCATTCGAATTCAGCGACCCCACAAAGGGCCATATTATGTCTCTCCCAAAACGATTGATCAACTCATTGCAAATCTTAGGAAATGGGCAAGGTGGTATAAGTATGCTTCTTTAGGCTTGACAGTGTTTGGTGCTTATCTAATTGCCAAGCATGCTATTCGGTACATCAATAAGCCTACTGGTGATACAGCAATTGCTGAAATAGAGGCTGAACTTTATGGTTTACAGGCACCAAACCACTAA 1059 0.4457 MQEYNCNTSANRTQCLFEVPVATPLSPTESGAATKLDGDDGDGKEKEDDQELKGVDVGEIEGTKGEDEKQWLWELSVQISMKMVPWGGIGCCLSAAALYLLARSSGRGAEILKSVTRVNQLKELAQLLDAEILPLVVSICGRVGSETPINCEFSGSRGVIVEETSNIFSNTMMLDPGSWIQDSALMPSMIKEVPWYLDDGTDRVHVVGARDAIGFVLPVGSEAFEESGRSLVRRILDHLRGLKMLGVKRIERVLPVGTSLTVVGEAAKDDVGTIRIQRPHKGPYYVSPKTIDQLIANLRKWARWYKYASLGLTVFGAYLIAKHAIRYINKPTGDTAIAEIEAELYGLQAPNH* 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02239 352 Pfam E3 Ubiquitin ligase 178 316 IPR022170 GO:0004842|GO:0006996|GO:0016567
Rops6g02239 352 PANTHER - 82 330 IPR044231 GO:0004842|GO:0016567
Rops6g02239 352 MobiDBLite consensus disorder prediction 35 60 - -
Rops6g02239 352 MobiDBLite consensus disorder prediction 24 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02239 Rops-Chr6 40844380 40850328 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02239 83 325 C3H Transcription Factor Family AT1G63900 69.636 6.54e-123 353
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02239 K15688 - gmx:100800734 401.364