Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02238 ATGGCAGTTTTCGCTAATGAACAGATCCAGATTATTGGCAATGGTGATCTTGAAGAACTACAAGAGTTAGGATCTGGTGCCTTTGGAACTGTTTACCATGGTAAATGGAGGGGAACAGATGTTGCGATTAAGAGAATAAAAAGTAGTTGTTTCACTGGTTGGTTGTCAGAGCAAGAGCGATTAATTTTTTGGGGAGAGGCACGAATTCTGTCAACTCTTCACCATCCAAATGTGGTAGCATTTTATGGGGTAGTTCCAGATGGCCCAGGTGAAACATTGGCAATTGTAACAGAATACATGTTGCATGGATCACTGAGGAATGTTCTCTTGAAGAAAGAGAAAGTGCTTGACCGTCGTAAAAGCACACTTGTTTCTGGTGGTGTCAGAGGAACCCTTCCATGGATGGCACCAGAATTACTGGATGGTAACAGTATTAGGGTGTCTGAGAAGGTTGATGTTTTCTCGTTTGGCATTGCAATGTGGGAAATCTTGACGGGGAAAGAACCGTATGCTAACATGCACTGTGGTGCTATCATAGGAGGTGTTGTAAATAACACGCTCAGGCCTCCAATTCCAAAACGCTGTGATTCTGAGTGGAAAAGGTTGATGGAAGAGTGTTGGAGTCCTGATCCTGCAGCCAGGCCATCCTTCACTGAAGTTAAAGATAGACTTCGCAACATTGCAGCTGCACTGTAG 696 0.4397 MAVFANEQIQIIGNGDLEELQELGSGAFGTVYHGKWRGTDVAIKRIKSSCFTGWLSEQERLIFWGEARILSTLHHPNVVAFYGVVPDGPGETLAIVTEYMLHGSLRNVLLKKEKVLDRRKSTLVSGGVRGTLPWMAPELLDGNSIRVSEKVDVFSFGIAMWEILTGKEPYANMHCGAIIGGVVNNTLRPPIPKRCDSEWKRLMEECWSPDPAARPSFTEVKDRLRNIAAAL* 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02238 231 Gene3D Phosphorylase Kinase; domain 1 11 103 - -
Rops6g02238 231 SUPERFAMILY Protein kinase-like (PK-like) 10 223 IPR011009 -
Rops6g02238 231 PIRSF ILK 5 125 - -
Rops6g02238 231 PIRSF ILK 117 231 - -
Rops6g02238 231 ProSiteProfiles Protein kinase domain profile. 17 231 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g02238 231 ProSitePatterns Protein kinases ATP-binding region signature. 23 44 IPR017441 GO:0005524
Rops6g02238 231 PANTHER SERINE-THREONINE PROTEIN KINASE 14 119 - -
Rops6g02238 231 Gene3D Transferase(Phosphotransferase) domain 1 106 230 - -
Rops6g02238 231 Pfam Protein tyrosine and serine/threonine kinase 122 224 IPR001245 GO:0004672|GO:0006468
Rops6g02238 231 Pfam Protein tyrosine and serine/threonine kinase 18 117 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02238 Rops-Chr6 40841672 40843878 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02238 9 230 MAP Kinase Kinase Kinase AT2G35050 57.762 4.23e-103 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-6 Rops6g02238 PK_Tyr_Ser-Thr 9.3e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02238 - - tpra:123914366 363.999