Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02223 ATGAATATCCTCATCCTCTTCGCCACCCTCCTTTCTTTTCCTCTCCCTTCCCTCTCCCAAAACGCCACCACCATTCCATGCCCCCTCAACTTCACCGTCCTCGGCGGTGCCGTCTTCGACTCCTCCAGTAGCACACGGTGCCAGTTCATCCACCAAGCCCTCCGTCTCGTCCAGTCCGATTACCTCCGCCGCAGCAGCTTCTTCCGCCCTTCACTCAACTCCTCTAATTCATGTTGGAACTCCTTCCAATCTTACATCAACCGTTTCGACCCCACCTTTGATATTCGCTCTTCTTGTGGATTCCAAACCAGTTGGATCTCCCAAGGTTGTGTCAACGTCACCACCAAGCAACAATTCGAAGCACTGGTTCCTCAATCAGCCCTTCAAAACATGCAAGCTAATTGTAACCAATCACTTGAGAATAATTCCCCATGTGCGCTTTGCACTAGTAGCTTTTCCACTTTGCCATCTTTGGGACAATCCATTGGGAACCTCTCTGATTGCACGGGTTATCCTTCTATTTATGCTGCTGCTTTTTGTAACCAGTTTGGACCCTCTGACCATGGCACTGCTAAGTGCTTGTTCGCCCTTGATTTAAACCCTGGAGGTTCCTCTTCTGGTAAAAAGAAGGTTGTTATTATTGTTGTTTCAATTGTTTGTGTCTTGGCTTTGTGCCTTTTACTTCTCGGGTTATGTGTTTATTGGAAATTGTACGGTGGGGTAAGAGGGGATAAGGATGTTAATATTGCTGAGACGCGTTTGGTTTCTGGGTTGGATTCTATGGACCAGAGTACCACTTTGATTAGGTTCACTATTGATGATATTAAGAAGGCCACTAAGAATTTTTCCAGGGATAATATTATTGGGAGAGGGGGTTATGGGAATGTGTATAAAGGGTTGCTGTCTGATGGGAGTGAGGTTGCGTTGAAGAGGTTCAAGAATTGTTCGGCTGCTGGTGATGCTAGCTTCACTCATGAAGTTCAGGTTATAGCTAGTGTTAGGCATGTCAACCTTGTTGCTTTGAGAGGTTATTGTTCTGCCACCACTCGTTTAGAAGGTTACCAGAGGATTATTGTTTGTGATTTGATGCAAAACGGGAGCCTTCATGATCATTTGTTTGGTTCTATGGGGATGAAACTCAGTTGGCCAATTCGTCAGAGGATTGCTCTGGGAACGGCTAGGGGATTGGCTTATTTGCATTATGGGGCTCAGCCTTCAATCATCCATAGGGATATTAAAGCAAATAATATACTTCTGGATGAGAAGTTTGAAGCTAAGGTGGCAGATTTTGGATTAGCAAAGTTCAACCCTGAGGGAATTACTCATATGAGCACCAGGGTAGCTGGCACTATGGGGTATGTTGCTCCTGAGTATGCTTTGTATGGACAATTGACAGAGAGAAGTGATGTGTTTAGTTTTGGTGTTGTGCTTCTTGAGCTTTTGAGTGGGAGGAAGGCTCTTCAAATGAACACTGATGGCCAACCCTCTGCTTTGACTGATTGGGCTTGGTCATTAGTTAGAACAGGTAAAGCTTTGGATGTTATTGAAGATGGCATGCCAGAACCTGGTTCACCTCAAGTTCTTGAGAAGTATGTGTTGATTGCTGTAGTTTGTTCTCATCCACAGTTATATGCTAGGCCAACAATGGATCAGGTTGTTAAAATGATGGAGACTGAAGATGATTCAGTGCCCTCAGTACCGGAACGGCCAATCCCTCTTATTGCTGGGAGGCTTGATATTGAGAGATCTGTGAGCAGTAGTGGCTCCGGTCAACTCTCTAGTCCAACCGGTTATCAAGCATATACTTTAGGAAGTGAGCACCATTCTTCTAATAATTCTAGGGAAGAGAGAAGCTCAAGCTCAAGGATTTTGAGTACAGATTGA 1884 0.4496 MNILILFATLLSFPLPSLSQNATTIPCPLNFTVLGGAVFDSSSSTRCQFIHQALRLVQSDYLRRSSFFRPSLNSSNSCWNSFQSYINRFDPTFDIRSSCGFQTSWISQGCVNVTTKQQFEALVPQSALQNMQANCNQSLENNSPCALCTSSFSTLPSLGQSIGNLSDCTGYPSIYAAAFCNQFGPSDHGTAKCLFALDLNPGGSSSGKKKVVIIVVSIVCVLALCLLLLGLCVYWKLYGGVRGDKDVNIAETRLVSGLDSMDQSTTLIRFTIDDIKKATKNFSRDNIIGRGGYGNVYKGLLSDGSEVALKRFKNCSAAGDASFTHEVQVIASVRHVNLVALRGYCSATTRLEGYQRIIVCDLMQNGSLHDHLFGSMGMKLSWPIRQRIALGTARGLAYLHYGAQPSIIHRDIKANNILLDEKFEAKVADFGLAKFNPEGITHMSTRVAGTMGYVAPEYALYGQLTERSDVFSFGVVLLELLSGRKALQMNTDGQPSALTDWAWSLVRTGKALDVIEDGMPEPGSPQVLEKYVLIAVVCSHPQLYARPTMDQVVKMMETEDDSVPSVPERPIPLIAGRLDIERSVSSSGSGQLSSPTGYQAYTLGSEHHSSNNSREERSSSSRILSTD* 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02223 627 Gene3D Transferase(Phosphotransferase) domain 1 363 566 - -
Rops6g02223 627 MobiDBLite consensus disorder prediction 584 608 - -
Rops6g02223 627 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 42 616 - -
Rops6g02223 627 ProSitePatterns Protein kinases ATP-binding region signature. 288 310 IPR017441 GO:0005524
Rops6g02223 627 Coils Coil 621 627 - -
Rops6g02223 627 SMART serkin_6 282 556 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g02223 627 Gene3D Phosphorylase Kinase; domain 1 248 361 - -
Rops6g02223 627 ProSiteProfiles Protein kinase domain profile. 282 574 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g02223 627 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 244 361 - -
Rops6g02223 627 Pfam Protein kinase domain 283 554 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g02223 627 Pfam SPARK 25 157 IPR043891 -
Rops6g02223 627 CDD STKc_IRAK 288 557 - -
Rops6g02223 627 SUPERFAMILY Protein kinase-like (PK-like) 264 571 IPR011009 -
Rops6g02223 627 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 363 565 - -
Rops6g02223 627 ProSitePatterns Serine/Threonine protein kinases active-site signature. 407 419 IPR008271 GO:0004672|GO:0006468
Rops6g02223 627 MobiDBLite consensus disorder prediction 584 627 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02223 Rops-Chr6 40656031 40658125 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02223 3 613 Receptor kinase-like Gene Family AT2G48010 61.997 0.0 764
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Rops6g02223 Pkinase 6.2e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02223 - - gmx:100800760 916.376