Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02221 ATGTGGGCCACCCCAGTCCCTCCGTCCCTGATGGGGATGAAACTCAGTTGGCCAATTCGTCAGAGGATTGCTCTGGGAACGGCTAGGGGATTGGCTTATTTGCATTATGGGGCTCAGCCTTCAATCATCCATAGGGATATTAAAGCAAATAATATACTTCTGGATGAGAAGTTTGAAGCTAAGGTGGCAGATTTTGGATTAGCAAAGTTCAACCCTGAGGGAATTACTCATATGAGCACCAGGGTAGCTGGCACTATGGGGTATGTTGCTCCTGAGTATGCTTTGTATGGACAATTGACAGAGAGAAGTGATGTGTTTAGTTTTGGTGTTGTGCTTCTTGAGCTTTTGAGTGGGAGGAAGGCTCTTCAAATGAACAGTGATGGCCAACCCTCTGCTTAG 399 0.4637 MWATPVPPSLMGMKLSWPIRQRIALGTARGLAYLHYGAQPSIIHRDIKANNILLDEKFEAKVADFGLAKFNPEGITHMSTRVAGTMGYVAPEYALYGQLTERSDVFSFGVVLLELLSGRKALQMNSDGQPSA* 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02221 132 ProSiteProfiles Protein kinase domain profile. 1 132 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g02221 132 Gene3D Transferase(Phosphotransferase) domain 1 9 131 - -
Rops6g02221 132 ProSitePatterns Serine/Threonine protein kinases active-site signature. 42 54 IPR008271 GO:0004672|GO:0006468
Rops6g02221 132 Pfam Protein kinase domain 21 125 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g02221 132 PANTHER OS01G0750732 PROTEIN 14 130 - -
Rops6g02221 132 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 9 132 - -
Rops6g02221 132 SUPERFAMILY Protein kinase-like (PK-like) 14 126 IPR011009 -
Rops6g02221 132 SMART serkin_6 1 132 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02221 Rops-Chr6 40639302 40639700 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02221 14 130 Receptor kinase-like Gene Family AT2G48010 86.325 2.34e-69 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Rops6g02221 Pkinase 5.5e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02221 - - gmx:100794233 234.958