Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02220 ATGAATATCCTCATCCTCTTCGCCACCCTCCTTTCTTTTCCTCTCCCTTCCCTCTCCCAAAACGCCACCACCATTCCATGCCCCCTCAACTTCACCGTCCTCGGCGGTGCCGTCTTCGACTCCTCCAGTAGCACACGGTGCCAGTTCATCAACCAAGCCCTCCGTCTCGTCCAGTCCGATTACCTCCGCCGCAGCAGCTTCTTCCGCCCTCCACTCAACTCCTCTAATTCATGTTGGAACTCGTTCCAATCTTACATCAACCGTTTCGACCCCACCTTTGATATTCGCTCTTCCTGTGGATTCCAAAACAGTTGGATCTCCCAAGGTTGTGTCAACGTCACCACCAAGCAACAATTCGAAGCACTGGTTCCTCAATCAGCCCTTCAAAACACGCAAGCTAATTGTAACCAATCACTTGAGAATAATTCCCCATGTGCGCTTTGCACTAGTAGCTTTTCCACTTTGCGATCTTTGGGACAATCCATTGGGAACCTCTCTGATTGCACGGGTTATCCTTCTATTTATGCTGCTGCTTTTTGTAACCAGTTTGGACCCTCTGACCATGGCACTGCTAAGTGCTTGTTCGCCCTTGATTTAAACCCTGGAGGTTCGTCTTCTGGTAAAAAGAAGGTTGTTATTATTGTTGTTTCAATTGTTTGTGTCTTGGCTTTGTGCCTTTTACTTCTCGGGTTATGTGTTTATTGGAAATTGTACGGTGGGGTAAGAGGGGATAAGGATGTTAATATTGCTGAGACGCGTTTGGTTTCTGGGTTGGATTCTATGGACCAGAGTACCACTTTGATTAGGTTCACTATTGATGATATTAAGAAGGCTACTAAGAATTTTTCCAGGGATAATATTATTGGGAGAGGGGGTTATGGGAATGTGTATAAAGGGTTGCTGTCTGATGGGAGTGAGGTTGCGTTGAAGAGGTTCAAGAATTGTTCGGCTGCTGGTGATGCTAGCTTCACTCATGAAGTTCAGGTTATAGCTAGTGTTAGGCATGTCAACCTTGTTGCTTTGAGAGGTTATTGTTCTGCCACCACTCGTTTAGAAGATTCGGATTCATGGATGGCAAACAAAGGGAGAGAATTTGAACAAAAACATGAAAGAACGGATGAGTGCAAATCGCAAAGGAACGACGAAAGGAATTAG 1155 0.4571 MNILILFATLLSFPLPSLSQNATTIPCPLNFTVLGGAVFDSSSSTRCQFINQALRLVQSDYLRRSSFFRPPLNSSNSCWNSFQSYINRFDPTFDIRSSCGFQNSWISQGCVNVTTKQQFEALVPQSALQNTQANCNQSLENNSPCALCTSSFSTLRSLGQSIGNLSDCTGYPSIYAAAFCNQFGPSDHGTAKCLFALDLNPGGSSSGKKKVVIIVVSIVCVLALCLLLLGLCVYWKLYGGVRGDKDVNIAETRLVSGLDSMDQSTTLIRFTIDDIKKATKNFSRDNIIGRGGYGNVYKGLLSDGSEVALKRFKNCSAAGDASFTHEVQVIASVRHVNLVALRGYCSATTRLEDSDSWMANKGREFEQKHERTDECKSQRNDERN* 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02220 384 ProSitePatterns Protein kinases ATP-binding region signature. 288 310 IPR017441 GO:0005524
Rops6g02220 384 Pfam Protein kinase domain 283 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g02220 384 SUPERFAMILY Protein kinase-like (PK-like) 258 349 IPR011009 -
Rops6g02220 384 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 83 347 - -
Rops6g02220 384 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 244 358 - -
Rops6g02220 384 Gene3D Phosphorylase Kinase; domain 1 247 351 - -
Rops6g02220 384 Pfam SPARK 25 164 IPR043891 -
Rops6g02220 384 ProSiteProfiles Protein kinase domain profile. 282 384 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g02220 384 MobiDBLite consensus disorder prediction 358 384 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02220 Rops-Chr6 40634498 40639100 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02220 3 352 Receptor kinase-like Gene Family AT2G48010 52.381 3.96e-120 359
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Rops6g02220 SPARK 3.6e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02220 - - gmx:100800760 459.529