Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02219 ATGAAGGAAAAGGTGGATTCTCCCATCACAGTACTTGAGGACTATTTCAGGAGCTCAGATTCAGAATCAAGTTCTTCCAAAGAGCCAACAGTGGATTCTGAGTCTCAAGACATTTCAAAACCTGCTTCTAGATGGCATTCATTTCTTCAATTGTTGCGGACCAGATCAAAGAAACGGATAGCAACATTGCATCCTCTCAATTTCTCCAGAAGAATGAGCGGTAGCGTGAGGGAGACCATTTTGCCATTTTGTTTCACAGATGCAACTTTGTCCCCATGCAGTTCACCATGGAAGATCTTCACTCATCATGATATACAAGTTGCAACCAATTATTTTAGCCAAGAAAATTTGATTGGAAAAGGTGGTTATGCTGAAGTTTACAAAGGGTGTTTGCCAAATCGTCAGCTAGTTGCAATCAAACGGTTAACAAGAGGAACAGCTGATGAAATCATAGGAGACTTCTTATCAGAACTTGGTGTAATGGCGCATGTAAATCATCCCAATACCGCTAAGCTGGTTGGTTATGGGGTGGATGGGGGGATGCATCTAGTTCTTGAATTGTCTGAAAAGGGAAGCCTAGCTTCAGTGCTTTATGGTTCCAATGAGAAACTACCATGGTGTATCAGGCACAAAATTGCATTAGGAACAGCTAAGGGTATATTATATCTTCATGAAGGTTGTCAAAGAAGAATTATTCATAGAGATATAAAAGCTGCAAATATATTGCTCACGGAGGACTTTGAGCCTCAGATTTGTGATTTCGGTCTAGCAAAATGGCTGCCAGAGAATTGGACTCACCACACCGTTTCAAAATTTGAAGGAACTTTTGGCTACCTTGCTCCTGAATACTTGCTTCATGGCATAGTGGACGAGAAAACAGACGTATTTGCATTTGGTGTATTGCTATTAGAATTAGTCAGTGGACGACGAGCACTTGATTATTCACAGCGAAGCCTTGTTTTGTGGGCAAAACCATTGCTGAAAAAGAATGATATCAGGGAGCTGATTGATCCTTCATTAGCAAATGACTTTGACTCAAGGCAGATGAATCTTATACTCTTGGCAGCTTCTTTATGCATACAACAGTCCTCAATTCGTCGTCCCTCTATGAGACAGGTTGTGCAGCTTCTGAATGGCAACCTTAGCTACTTTAAGGGCATGAGGAAAACTCGACTGCCATTCTTCAAAAAAGTCTTCCGAGAAGAACTTCTTGATTCTGAATAG 1224 0.4109 MKEKVDSPITVLEDYFRSSDSESSSSKEPTVDSESQDISKPASRWHSFLQLLRTRSKKRIATLHPLNFSRRMSGSVRETILPFCFTDATLSPCSSPWKIFTHHDIQVATNYFSQENLIGKGGYAEVYKGCLPNRQLVAIKRLTRGTADEIIGDFLSELGVMAHVNHPNTAKLVGYGVDGGMHLVLELSEKGSLASVLYGSNEKLPWCIRHKIALGTAKGILYLHEGCQRRIIHRDIKAANILLTEDFEPQICDFGLAKWLPENWTHHTVSKFEGTFGYLAPEYLLHGIVDEKTDVFAFGVLLLELVSGRRALDYSQRSLVLWAKPLLKKNDIRELIDPSLANDFDSRQMNLILLAASLCIQQSSIRRPSMRQVVQLLNGNLSYFKGMRKTRLPFFKKVFREELLDSE* 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02219 407 FunFam Receptor-like cytosolic serine/threonine-protein kinase RBK2 83 186 - -
Rops6g02219 407 ProSitePatterns Protein kinases ATP-binding region signature. 118 140 IPR017441 GO:0005524
Rops6g02219 407 ProSiteProfiles Protein kinase domain profile. 112 384 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g02219 407 Pfam Protein kinase domain 113 375 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g02219 407 PANTHER OS08G0249100 PROTEIN 6 403 IPR046958 -
Rops6g02219 407 MobiDBLite consensus disorder prediction 14 39 - -
Rops6g02219 407 Gene3D Phosphorylase Kinase; domain 1 85 186 - -
Rops6g02219 407 MobiDBLite consensus disorder prediction 1 39 - -
Rops6g02219 407 SUPERFAMILY Protein kinase-like (PK-like) 91 377 IPR011009 -
Rops6g02219 407 SMART serkin_6 112 384 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g02219 407 Gene3D Transferase(Phosphotransferase) domain 1 189 389 - -
Rops6g02219 407 ProSitePatterns Serine/Threonine protein kinases active-site signature. 231 243 IPR008271 GO:0004672|GO:0006468
Rops6g02219 407 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK2 189 391 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02219 Rops-Chr6 40620580 40623716 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02219 100 379 Receptor kinase-like Gene Family AT1G53420 40.625 1.67e-65 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Rops6g02219 Pkinase 1.1e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02219 - - gmx:100780587 722.62