Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02205 ATGGCGGAAGAGAGTGTGAAACTGTTCGTAGGTCAAGTGCCGAAGCACATGACAGAAGATGAGGTGCTTGCAATGTTCAAGGAGTTCGCTTTAGTTGACGAGGTCAACGTCATCAAAGACAAAGCTACTCGTGCCTCTCGAGGTTGTTGCTTTGTGATTTGTCCCTCCAGGGAAGAAGCTGATAAGGCCGTCAATGCCTGTCATAATAAGAAAACGCTTCCTGGGGCATCTAGTCCGTTGCAAGTGAAGTATGCAGATGGCGAGTTGGAAAGATTAGAACACAAACTCTTTATTGGCATGCTTCCAAAGAATATATCTGAAGTTGAAGTCTCTACTCTTTTCTCCAAGTATGGAACTATAAAGGATTTACAGATTGTAAGAGGTTCTCATCAAACAAGTAAAGGATGTGCATTTTTGAAGTATGAAACCAAAGAACAGGCCCTTGCTGCTCTTGAGGCAATCCATGGAAAGCGTAAAATGGAGTATGTGGTAGAATGGAAAGGTGCGTGCTTTTTAAAATCAATTACAGTTTTAGTTGTAAATGGTGTTTGCAGCACTTTGGACCTTCAAGCAGCTTTCAGCCACAAAATTCTGTTGGGTTCAAGTGTTCCTTTGGTTGTCAAATGGGCTGATACTGAAAAAGAAAGAAAAGCTCGGAGGGCTCAGAAAGCACAGTCCCAAGTTTCCAATGTGCCACATGAAGATTTTCAGTACCCCTCGTCATTTGGAGCCTTGCCAATGGGTTATGTTCCACCATATAGTGGATATGGTTATCAGGCTCCTGGGGGTTATGGGCTCATGCCGTACCGTTTGCTACCAATGCAGAATCAACCAGGTTTCCATAATATGATGTATCACATGAACCGAGGAAATGCATTGCGGCCTGATCTTGGTCACAATATGAACCCTAGAAATTATCCTGTGCCTCCTATAAGTTACGTTGCCTCTTATTCTGCTGTGCCAGGTTTACAGCATCCAATGGCATACCCTGGAGGAATGATTAGTCCAAGGCCTGTGAGCAGTTCTGCTGGTTCTGTTTCACCTGCAGGTGGGAATAACAACTCTGCCACATCTTCAAGCACCAGTAAAAATTCTGGTGGTCAGATTGAAGGACCACCTGGTGCCAATCTATTTATTTATCACATACCTCAAGAATTTGGAGACCAAGAACTTGCAACTGCTTTTCAACCGTTTGGTAGAGTTTTGAGTGCTAAAATTTTTATTGATAAAGCAACCGGTGTAAGCAAATGTTTTGGGTTTGTTAGTTATGATACTCCAGAAGCTGCTCAAGATGCCATTAGTATGATGAATGGTTGCCAATTAGGTGGTAAGAAATTAAAGGTTCAGCTTAAGAGGGATAACAAACAGAGCGGGTCTTACTGA 1383 0.4281 MAEESVKLFVGQVPKHMTEDEVLAMFKEFALVDEVNVIKDKATRASRGCCFVICPSREEADKAVNACHNKKTLPGASSPLQVKYADGELERLEHKLFIGMLPKNISEVEVSTLFSKYGTIKDLQIVRGSHQTSKGCAFLKYETKEQALAALEAIHGKRKMEYVVEWKGACFLKSITVLVVNGVCSTLDLQAAFSHKILLGSSVPLVVKWADTEKERKARRAQKAQSQVSNVPHEDFQYPSSFGALPMGYVPPYSGYGYQAPGGYGLMPYRLLPMQNQPGFHNMMYHMNRGNALRPDLGHNMNPRNYPVPPISYVASYSAVPGLQHPMAYPGGMISPRPVSSSAGSVSPAGGNNNSATSSSTSKNSGGQIEGPPGANLFIYHIPQEFGDQELATAFQPFGRVLSAKIFIDKATGVSKCFGFVSYDTPEAAQDAISMMNGCQLGGKKLKVQLKRDNKQSGSY* 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02205 460 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 375 453 IPR000504 GO:0003723
Rops6g02205 460 MobiDBLite consensus disorder prediction 339 370 - -
Rops6g02205 460 PANTHER RNA BINDING PROTEIN 6 454 - -
Rops6g02205 460 Gene3D - 91 221 IPR012677 -
Rops6g02205 460 FunFam RNA-binding protein BRN1 342 452 - -
Rops6g02205 460 MobiDBLite consensus disorder prediction 339 369 - -
Rops6g02205 460 SUPERFAMILY RNA-binding domain, RBD 94 455 IPR035979 GO:0003676
Rops6g02205 460 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 94 161 IPR000504 GO:0003723
Rops6g02205 460 SMART rrm1_1 95 163 IPR000504 GO:0003723
Rops6g02205 460 SMART rrm1_1 7 83 IPR000504 GO:0003723
Rops6g02205 460 SMART rrm1_1 376 449 IPR000504 GO:0003723
Rops6g02205 460 FunFam RNA-binding protein BRN1 1 90 - -
Rops6g02205 460 CDD RRM1_2_CELF1-6_like 7 83 - -
Rops6g02205 460 CDD RRM3_CELF1-6 377 449 - -
Rops6g02205 460 Gene3D - 341 452 IPR012677 -
Rops6g02205 460 Gene3D - 2 90 IPR012677 -
Rops6g02205 460 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 87 IPR000504 GO:0003723
Rops6g02205 460 SUPERFAMILY RNA-binding domain, RBD 4 89 IPR035979 GO:0003676
Rops6g02205 460 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 377 447 IPR000504 GO:0003723
Rops6g02205 460 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 96 160 IPR000504 GO:0003723
Rops6g02205 460 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 72 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02205 Rops-Chr6 40484442 40490121 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02205 368 450 Eukaryotic Initiation Factors Gene Family AT1G22760 37.349 2.12e-10 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02205 K13207 - gmx:100813239 697.197
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g02205 6 40484442 40490121 Rops6g02205 6 40484442 40490121 ECH
Rops8g03621 8 76309520 76316757 Rops6g02205 6 40484442 40490121 PCT