Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02194 ATGTCGTTTAGGAGCATAATTCTGGATAGGAAGGGATTTGAGGTGAAGTTTGGGTATGGTATGAGATCCAGGTCACAGTCACACAGTGATGTTATTGCACAGGATAGTTCATTGGTGCTTGATGGGTTGAAGCAGAGTTGTTGGGCTAACATGCCCCCTGAGCTTTTGAGGGATGTGCTCATGAGGATAGAATCCTCTGAAGATACTTGGCCTTCCCGGAAACATGTCGTCGCCTGTGCCGGTGTTTGCCGCAGTTGGAGAGAAATCATGAAGGAAATTGTCAAATCTCCTCAAGTATCCGGCAAGTTGACATTCCCTATCTCCTTGAAGCAGCCTGGTCCTAGGGACTCTCTTCTTCAGTGCTATATTAAACGAAATCGCAGTAATCAAACATATTATCTGTATCTTGGTTTAAACCCAGATAATTTTGCAGCCTCAACTGACGATGGCAAGTTCCTTCTTGCTGCACGCAAGTGTCGGCGTGCAACCCACACTGACTATATCATCTCTCTAAACTATGATGATGTATCAAGAGGGAGTAGCACCTATATTGGGAAGTTGAGATCAAACTTTCTGGGCACCAAATTCACTGTGTATGATGCACACCCTCCAATTTATGGATCCAAAGTTACAAAGTCTCGTTCCACCAGGCTAGTTAGTCTCAAGCAAGTGTCTCCAAGAGTTCCTGCAGGAAACTATCCCATTGTGCATGTCTCATATGATCTGAATGTTTTGGGCTCTAGGGGCCCTAGGATAATGCAATGTGTTATGGATGCCATCCCTGCCTCAGCTGTTGAACCTGGAGGTGTGGCCCCAACACAGACTCAATTTCTTCATAGCAGAATTGATACTTCTCCATCTATCCCATTCTTCAGATCAAAATCAACCCGCATGGACAATCTCCAATCAGTACCTTTGGCCTGTCAAAATGAGGGGATGCTGTTGCTTCGGTTAAAAATTTCCAGCTGGTTGCTTCTCCTAGAAATGGAGTTTCTGAGCAGGCCCAGGAAAATGTTATTCTACAGTTTGGAAAAGTTGGAAAGGATGTATTCACCATGGATTACCAGTATCCAATCTCTGCCTTTGAAGCATTTGCTATATGCCTTAGCAGCTTTGACACCAAGATTGCTTGTGAATGATCACCGGCATTACTGGCAGGTGTTAGCTGGCTGGAATTGCTCTCACGGTATTGCAGGTCTAATATTGGCAATATAG 1215 0.4461 MSFRSIILDRKGFEVKFGYGMRSRSQSHSDVIAQDSSLVLDGLKQSCWANMPPELLRDVLMRIESSEDTWPSRKHVVACAGVCRSWREIMKEIVKSPQVSGKLTFPISLKQPGPRDSLLQCYIKRNRSNQTYYLYLGLNPDNFAASTDDGKFLLAARKCRRATHTDYIISLNYDDVSRGSSTYIGKLRSNFLGTKFTVYDAHPPIYGSKVTKSRSTRLVSLKQVSPRVPAGNYPIVHVSYDLNVLGSRGPRIMQCVMDAIPASAVEPGGVAPTQTQFLHSRIDTSPSIPFFRSKSTRMDNLQSVPLACQNEGMLLLRLKISSWLLLLEMEFLSRPRKMLFYSLEKLERMYSPWITSIQSLPLKHLLYALAALTPRLLVNDHRHYWQVLAGWNCSHGIAGLILAI* 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02194 404 CDD F-box_AtTLP-like 48 92 - -
Rops6g02194 404 Pfam Tub family 109 323 IPR000007 -
Rops6g02194 404 SUPERFAMILY Tubby C-terminal domain-like 97 286 IPR025659 -
Rops6g02194 404 PANTHER TUBBY-RELATED 27 298 - -
Rops6g02194 404 PRINTS Tubby superfamily signature 232 259 IPR000007 -
Rops6g02194 404 PRINTS Tubby superfamily signature 167 183 IPR000007 -
Rops6g02194 404 PRINTS Tubby superfamily signature 183 207 IPR000007 -
Rops6g02194 404 Pfam F-box domain 48 94 IPR001810 GO:0005515
Rops6g02194 404 Gene3D Tubby Protein; Chain A 108 327 IPR025659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02194 Rops-Chr6 40402261 40405943 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02194 1 352 TUB Transcription Factor Family AT2G47900 66.022 4.70e-160 454
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Rops6g02194 Tub 4e-55 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02194 K19600 - gmx:100809257 587.415