Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02184 ATGGACTTGTACGGTCGGAGCCCCGCGAGGAATGGATCGAACCCGGTAAATCAACCCGAATGGCGCTCACCGGGTACCGACACTGGTCTCGAAGAGTCGATGTGGCATTTGACGTTGGGTGGTGGAGAATCTTACCCGGAGCGACCCGGCATGCCTAATTGCGTTTATTACATGCGGACCGGGTTCTGTGGATATGGTGCCAGGTGTCGTTACAATCATCCACGTGATCGTGCTGCGGTTGCAGCGGCTGTTAGAGCTACAGGGGACTACCCAGAACGGGTGGGGGAACCTCCTTGTCAGTATTATTTAAAAACCGGAACCTGTAAATTTGGTGCATCCTGTAAATTCCACCATCCCAAACATGGAGGTGGATATTTAAGCCAAGCTCCACTAAATGTTTATGGATACCCGTTACGACCGGGTGAGAAAGAATGCTCCTACTATTTGAAAACGGGGCAATGCAAATTTGGTATAACTTGTAAATTCCATCATCCTCATCCTGCTGGCACATCATTGCCAGCATCTGCACCTCAATTTTATCAACAGGTGCAGTCTCCTACGGTTCCTCTGCGTGAACAGTATGGAGGAGCTTCCACAAGCTTGAGAGTGGCTAGGCCTCCTATGTTGCCTGGTTCATATGTACAAGGGGCTTATGGTCCTGTACTTCTTTCCCCAGGGGTTGTTCCATTTCCTGGATGGAGTCCTTATTCGGCACCTGTAAGTCCTGTGTTATCTCCTGGCGCTCAACCTGCTGTTGGGGCCACTTCTCTATATGGAGTGACCCAGTTGTCATCATCAACATCAGCTTTTGCTAGACCATATACTCCTCTGCCCTCTTCTGCTGGCCCTTCAGGAAGCAGCCCAAAGGAACAAGTATTTCCTGAAAGACCTGGTGAACCTGAATGCCAATACTATCTGAGAACAGGGGACTGTAAATTTGGATTAGCTTGTCGATTTCATCATCCTCGGGACCAGGTTGCGGCACGGCCACTTCTTAGCCCCATTGGTCTTCCAATACGTCCGGGGGTACAACCTTGTGCATTTTATTTGCAAAATGGGCATTGCAAGTTCGGCTCCACATGCAAATTTGACCATCCTTTGGGTTCTATGAGATACAGTCCATCGGCATCTTCTCTTGTTGATGTGCCAGTTGCTCCATACCCAGTTAGGTCTTTGCTGTCTAACCTGGCTCCTTCAACAACATCTTCAGAGCTTCTCCCTGAACTGATGTCAGGGTCCAAAAAGGAATCCTTTTCAGCCAGAATGCCTTCTTCTGGAAATAGTTCTGGTACTTCTTCTGTTGGATTAATTTTCTCACAAGGTGGGTCTGTCTCACTATCCGATGTGCAACTCTCAAGTCAGAGTTCTGCCCCTGTAAGCAGTGGCAGAAGCACCAGACAAAGTGGTGATATACGTTGA 1419 0.4877 MDLYGRSPARNGSNPVNQPEWRSPGTDTGLEESMWHLTLGGGESYPERPGMPNCVYYMRTGFCGYGARCRYNHPRDRAAVAAAVRATGDYPERVGEPPCQYYLKTGTCKFGASCKFHHPKHGGGYLSQAPLNVYGYPLRPGEKECSYYLKTGQCKFGITCKFHHPHPAGTSLPASAPQFYQQVQSPTVPLREQYGGASTSLRVARPPMLPGSYVQGAYGPVLLSPGVVPFPGWSPYSAPVSPVLSPGAQPAVGATSLYGVTQLSSSTSAFARPYTPLPSSAGPSGSSPKEQVFPERPGEPECQYYLRTGDCKFGLACRFHHPRDQVAARPLLSPIGLPIRPGVQPCAFYLQNGHCKFGSTCKFDHPLGSMRYSPSASSLVDVPVAPYPVRSLLSNLAPSTTSSELLPELMSGSKKESFSARMPSSGNSSGTSSVGLIFSQGGSVSLSDVQLSSQSSAPVSSGRSTRQSGDIR* 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02184 472 ProSiteProfiles Zinc finger C3H1-type profile. 93 121 IPR000571 GO:0046872
Rops6g02184 472 MobiDBLite consensus disorder prediction 274 295 - -
Rops6g02184 472 SUPERFAMILY CCCH zinc finger 141 167 IPR036855 GO:0046872
Rops6g02184 472 PANTHER PROTEIN PHOSPHATASE RELATED 39 388 - -
Rops6g02184 472 MobiDBLite consensus disorder prediction 10 24 - -
Rops6g02184 472 SUPERFAMILY CCCH zinc finger 96 121 IPR036855 GO:0046872
Rops6g02184 472 SUPERFAMILY CCCH zinc finger 52 77 IPR036855 GO:0046872
Rops6g02184 472 SMART c3hfinal6 296 323 IPR000571 GO:0046872
Rops6g02184 472 SMART c3hfinal6 48 75 IPR000571 GO:0046872
Rops6g02184 472 SMART c3hfinal6 93 120 IPR000571 GO:0046872
Rops6g02184 472 SMART c3hfinal6 139 166 IPR000571 GO:0046872
Rops6g02184 472 SMART c3hfinal6 340 367 IPR000571 GO:0046872
Rops6g02184 472 MobiDBLite consensus disorder prediction 417 434 - -
Rops6g02184 472 ProSiteProfiles Zinc finger C3H1-type profile. 296 324 IPR000571 GO:0046872
Rops6g02184 472 Gene3D - 295 377 - -
Rops6g02184 472 Gene3D - 92 176 - -
Rops6g02184 472 Gene3D - 42 87 - -
Rops6g02184 472 ProSiteProfiles Zinc finger C3H1-type profile. 139 167 IPR000571 GO:0046872
Rops6g02184 472 SUPERFAMILY CCCH zinc finger 300 326 IPR036855 GO:0046872
Rops6g02184 472 MobiDBLite consensus disorder prediction 449 472 - -
Rops6g02184 472 MobiDBLite consensus disorder prediction 1 28 - -
Rops6g02184 472 ProSiteProfiles Zinc finger C3H1-type profile. 340 368 IPR000571 GO:0046872
Rops6g02184 472 MobiDBLite consensus disorder prediction 404 434 - -
Rops6g02184 472 SUPERFAMILY CCCH zinc finger 342 371 IPR036855 GO:0046872
Rops6g02184 472 ProSiteProfiles Zinc finger C3H1-type profile. 48 76 IPR000571 GO:0046872
Rops6g02184 472 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 141 165 IPR000571 GO:0046872
Rops6g02184 472 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 342 366 IPR000571 GO:0046872
Rops6g02184 472 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 298 323 IPR000571 GO:0046872
Rops6g02184 472 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 96 120 IPR000571 GO:0046872
Rops6g02184 472 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 50 75 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02184 Rops-Chr6 40218961 40223146 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02184 20 434 C2H2 Transcription Factor Family AT5G18550 52.703 3.29e-137 401
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Rops6g02184 zf-CCCH 1e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02184 - - gmx:100812475 865.914