Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02182 ATGTCAAATGTTTCAGGTGATGAGGTAAGTTTCTCCTCAGCAAACACTGGGGAAGAAGTTCATCAAGAAAAGGAGGAGCAGCAACTACAAAATCATCCCCATGGCTCAAGTTCAGGACCTTGTAAGAGCAATAGCTCCACTAATCAACAACAACAGGCAACCAAGAAGAAAAGAAGCCTACCTGGAACCCCAGATCCGAAAGCCGAAGTTATTGCATTATCACCAACCTTATTAATGGCAACAAATAGATTCGTCTGTGAGGTCTGCAACAAAGGATTTCAGAGGGACCAAAACCTTCAGTTACACCGCAGAAGTCACAATCTGCCATGGAAACTCAGGCAGAGAGCAAGCAGTGAGGTGAAAAAACGAGTCTATGTGTGCCCTGAGCCATCATGCGTTCACCATAACCCTGCTCGTGCATTAGGAGACCTCACTGGCATTAAAAAACATTACAGTCGGAAACATGGTGAGAAAAAATGGAAATGTGACAAGTGCTCTAAAAGATATGCATTCCAATCTGATTGGAAGGCCCACCAGAAAACCTGTGGTACCAAGGAATACAAATGCGATTGTGGGACCATATTTTCCAGGAGAGATAGTTTTATCACCCATAGAGCTTTTTGTGATGCATTAACTGAAGAAAACAGCCGAGTGAACCAAGGATTAACGAGTGGCATGACATCAAACTTGCAAAATGAAGTGCCAGATCTTATGGCTACAATGCCACTAAGCACTAGTTCCAACACTGTATTCAACGACGACCCTAAGAACCCACTTAAAACCCTCTCCAAAGAACTAGTCCCGATGCCATTCGAGTCCATGAGCATGGTTGGGGGCATGTTCTCCACCACTTCGGGTACACTTTTTGGTGGTCCAAAAAGCATGTCTCCCTCTTCTTCCAGCCTTCAACTCAGTACCAACAATTCCCATGGTTTCAATTACTTTCAAGACAACAAAAATGGAGGCCTAATTTCTGGCTCAGCTCACATGTCTGCAACAGCTTTATTACAGAAAGCAGCTCAAATGGGAGCCACTGCAAGCAATAGCATGAACTCTCCCATGATGCAGAAAAGCTTTGTCAGTAGCATGGTTGGTCCTGATCATGTTTCTTCTCCTAGACCACCATATTTTGGTGCTATGCAGCAGCATAACTCTTCACGTGGTCACTTCCATCCACAGCCTGATCAATCCCACATGGCTGGGGTAAGTGGTGGTGGAGCGTTCACCAACCAAATTTTTCAGAAAGGGCAACAAGAAATATCACTAATATTTGATTCTAATACCACCGGGTCAACGATGAATGATATGGGAATGTTCAGTACAGTGTTCATGGGAAGTGATCACAACTTAAGCTTGAAGAATGTGGAACAAGAGGTTGGTACTAGTTCGACGAGTTTGATCCATGGAAGAGATGAAGCAGAAGGAAACCCAGTGGGGCCATCAAGGTTTGGAGGTAATGACATGGCAAAGGTTCATGACTTCTTGGGCGTTGGGGGTTCAATTTCAAAGGAAACGAGTTTGCATGAACCACAAAAACTACAACAGCAAAGACCGGAGTTAGAAGCATTAACCCATCAGAGGTTGCATGTTATGAATCACTTTCACCACCACCTTCCACATGGGGATTCAGCTATGGAGAGAAACCCATTTGGGACATTTGAGAACTGA 1668 0.4424 MSNVSGDEVSFSSANTGEEVHQEKEEQQLQNHPHGSSSGPCKSNSSTNQQQQATKKKRSLPGTPDPKAEVIALSPTLLMATNRFVCEVCNKGFQRDQNLQLHRRSHNLPWKLRQRASSEVKKRVYVCPEPSCVHHNPARALGDLTGIKKHYSRKHGEKKWKCDKCSKRYAFQSDWKAHQKTCGTKEYKCDCGTIFSRRDSFITHRAFCDALTEENSRVNQGLTSGMTSNLQNEVPDLMATMPLSTSSNTVFNDDPKNPLKTLSKELVPMPFESMSMVGGMFSTTSGTLFGGPKSMSPSSSSLQLSTNNSHGFNYFQDNKNGGLISGSAHMSATALLQKAAQMGATASNSMNSPMMQKSFVSSMVGPDHVSSPRPPYFGAMQQHNSSRGHFHPQPDQSHMAGVSGGGAFTNQIFQKGQQEISLIFDSNTTGSTMNDMGMFSTVFMGSDHNLSLKNVEQEVGTSSTSLIHGRDEAEGNPVGPSRFGGNDMAKVHDFLGVGGSISKETSLHEPQKLQQQRPELEALTHQRLHVMNHFHHHLPHGDSAMERNPFGTFEN* 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02182 555 Pfam Zinc-finger double-stranded RNA-binding 84 107 IPR022755 -
Rops6g02182 555 MobiDBLite consensus disorder prediction 1 17 - -
Rops6g02182 555 SUPERFAMILY beta-beta-alpha zinc fingers 83 181 IPR036236 -
Rops6g02182 555 Gene3D Classic Zinc Finger 80 107 - -
Rops6g02182 555 FunFam protein indeterminate-domain 5, chloroplastic-like 138 217 - -
Rops6g02182 555 MobiDBLite consensus disorder prediction 31 58 - -
Rops6g02182 555 Gene3D Classic Zinc Finger 139 218 - -
Rops6g02182 555 MobiDBLite consensus disorder prediction 1 68 - -
Rops6g02182 555 ProSiteProfiles Zinc finger C2H2 type domain profile. 84 106 IPR013087 -
Rops6g02182 555 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 36 513 IPR031140 -
Rops6g02182 555 FunFam protein indeterminate-domain 12-like 63 131 - -
Rops6g02182 555 SMART c2h2final6 84 106 IPR013087 -
Rops6g02182 555 SMART c2h2final6 125 155 IPR013087 -
Rops6g02182 555 SMART c2h2final6 160 180 IPR013087 -
Rops6g02182 555 ProSitePatterns Zinc finger C2H2 type domain signature. 86 106 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02182 Rops-Chr6 40203990 40207304 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02182 55 347 IDZ Gene Family AT3G50700 56.467 6.12e-112 339
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Rops6g02182 zf-C2H2_jaz 8.9e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02182 - - gmx:100782774 761.911