Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02181 ATGGGTGATAATATAGGCAAAGTCTCAGCAGTTGACAGAGAAGGCTTTAAGTACAATTTCACAACTGGAACTGCAACTTCAGCTCAAGATGGGGTCATTAGAGAGCAAGATCGTTTGCTTCCAATAGCTAATGTGGGCCGGATCATGAAGCAAATCCTGCCTCCTAATGCCAAAATCTCCAAGGAAGCTAAAGAAACCATGCAAGAATGTGTCTCTGAGTTCGTTAGCTTTGTAACCGGGGAAGCTTCTCATAAGTGCCACAAGGAGAAGCGCAAGACCGTGAATGGTGATGATATTTGCTGGGCCTTGGGTACTCTAGGGTTTGATGACTATGCTGAACCACTCAAAAGGTATTTGCATAAGTATAGGGAATTGGATGGGGAGAGAGCTAATCAAAATAAGGTTAACAACAGTGATGAAAATAATATTGAAACATATCAGCCACCAATACCTAGGAGAGCAACCACTGATTCCTCTGCTACCCCAATGGTCATGTTCAATGTCACTGGTAGGGGAAGTGGCTCTCAATGA 531 0.435 MGDNIGKVSAVDREGFKYNFTTGTATSAQDGVIREQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFVSFVTGEASHKCHKEKRKTVNGDDICWALGTLGFDDYAEPLKRYLHKYRELDGERANQNKVNNSDENNIETYQPPIPRRATTDSSATPMVMFNVTGRGSGSQ* 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02181 176 Gene3D Histone, subunit A 28 157 IPR009072 GO:0046982
Rops6g02181 176 MobiDBLite consensus disorder prediction 130 157 - -
Rops6g02181 176 SUPERFAMILY Histone-fold 36 142 IPR009072 GO:0046982
Rops6g02181 176 PRINTS CCAAT-binding transcription factor subunit A signature 105 123 - -
Rops6g02181 176 PRINTS CCAAT-binding transcription factor subunit A signature 67 85 - -
Rops6g02181 176 PRINTS CCAAT-binding transcription factor subunit A signature 86 104 - -
Rops6g02181 176 FunFam Nuclear transcription factor Y subunit B-3 28 149 - -
Rops6g02181 176 MobiDBLite consensus disorder prediction 131 157 - -
Rops6g02181 176 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 25 143 IPR027113 GO:0001228|GO:0006355|GO:0016602
Rops6g02181 176 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 39 103 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02181 Rops-Chr6 40187725 40188255 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02181 32 133 CCAAT-HAP3 Transcription Factor Family AT2G47810 79.412 5.01e-60 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Rops6g02181 CBFD_NFYB_HMF 6.9e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02181 K08065 - gmx:100796514 247.284