LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops6g02170	ATGGTTGAAACCAGACGTGGCTCTTCTTCTTCCAAGCGCTCCCTCTCTTCCCCATCTCCTCCTTCCAACACCAAACGATCCAAGGTTTCCGAGGATGCCTCATCGACAACGCTACCCTCCGCCGGAATTATCGCTCCGGTCAACGAATCTGGAACCGGAAACGAATCTGGAGAACCGGAGCTACGACCCCCTGATCTGCCTGATACGGCGTCGTTGAAGTCTGTGGATGTTTGTGATGCGGTAGAACCCGAAAAATCTCCTTCTGTGCCGGTTGAAGGCGAGGCTTTGGTGTCTCCTCAGTGTCTAGGTGAGACTGCGGAGAAATCGAAGGTGGCTGGTTCGGGGGCGGCGCCTGGTCGGTCGAAGAAACGCCCCACGAAATCAAGCCCCAAGGCTGCGTGGGGAAAGCTTCTTTCTCAGTGTTCTCAGAATCCTCACTTGTGCATGAGTGATCCTACCTTCACTGTCGGTCAAGGTCGTCAGTGTAATTTACTGCTTAAAGATCCAACTGTTGGTAATGTTCTGTGCAAGTTGAGCCACATAGAGATTACTGACCACAGTCATCATTTGCACTCTGTGCAGCGCGGAGGTTCATCGGTTGCCTTACTGGAAATCACAGGGGGTAAAGGCGCTGTTCAAGTTAATGGCGAGACTTACCGAAGGAATGCTCGTCTGATTTTAAGTGGAGGTGATGAGGTGGTCTTTGGTTCTTCTGGCAAGCATGCTTATATCTTTCAGCAGCTCAAAAATAATAATATTACTACCTCTGGTATACCTTCTTCTGTGAGTATTTTGGAAGCCCAGAATGCTCCTATAAATGGAATGCAAGTTGAAGCTAGATCTGGAGACCCTTCAGCTGTTGCTGGAGCATCAATATTGGCCTCTTTATCTAATCTTCATAAAGATTTATCTCTCCTTTCACCACCTGCTAAAACTTGCAAGAATGTGCGACATAATGCTGATATTTCATCACTACCTTCTGGCCATGGGGATGATATTCCAGACAATGAAATGAAGGATGCCACCAATAATGATGAAACGGCTGGAGTTTTTTCTGATGGGAAAACTGTTCTTGCATCCTCTACCACCGCTAATGAAAATCAAAGCGTTGACTCCGCGGAAGTTGATGCCAATGTGGATGCAGATGTTGGGAAGATGACTGCTGCTTCCTGCGAATTGAGGCCATTACTACGCATGCTTGCTGGCTCATGTCCTGATTTTGATTTAAGTAGCAGCATTTCCAAGATATTGGAAGAGCGAAGGGAGTTAAGAGAACTCCTTAAAGATATTGATACCCCAACAATACTGGCATCGACTAGGCGGCAAGCATTTAAGGACAGTTTACAACAGAGAGTTCTTGATGCTGAGAATATTGATGTCTCATTTGAAAGTTTCCCATATTATCTAAGTGATACAACAAAGAATGTTTTGATTGCTTCTACTTATATTCATTTGAAGTGCAATGGCTTTGGAAAATATGCTTCAGAGCTCTCGTCAGTGTCTCCACGGATATTGTTATCTGGTCCTGCTGGTTCGGATATATATCAGGAGACTTTGTCCAAGGCACTTGCAAAGCATTTTGGTGCCAGACTGCTAATTGTGGATTCTCTTTCGTTGCCTGGTGGAAGTCCTTTAAAGGAAGTTGATTCTGCTAAAGAAAGTTCAAGGCCTGAAAGACCATCGGTGTTAGCTAAGAGAAGTGCCCAGACTGCTACATTACATCATAAGAAACCAGCTTCTAGTGTTGATGCTGAAATTATAGGTGGATCCACATTAAGCTCTCAGGCTATGCTGAAGCAAGAGTTTTCTACTGCATCGTCAAAAGGCACTACTCTCAAAACAGGTGATCGAGTAAAATTTGTTGGTAACTTTCCATCTGGTGTCTCATCACTACAAAATTATCCTTCAAGGGGACCAAGTTATGGCTCCCGGGGCAAAGTTCTCCTTGCTTTTGAGGATAATGGGTCTTCAAAAATTGGGGTTAGGTTTGATAAATCAATTCCAGATGGCAATGATCTTGGAGGCCTTTGCGAAGATGATCGTGGGTTCTTTTGTTCTGCAAATCATTTACTACGGGTTGATGGCTCTGGAGGGGACGACTTTGACAAAGTTGCAATTAATGAAATCTTTGAGGTTGTCTCTGATCAAAGCAAAAATGGTGCACTAGTGTTGTTCATTAAAGATATAGAGAGGGCAATGGTTGGGAACTCAGAGGTTTTGAAAAGTAAATTTGAAAGCTTGCCACAGAATGTTGTGGTAATTGGCTCACATGCCCAGCTGGACAGTCGTAAGGAGAAGAGCCAACCTGGTGGCCTTCTGTTCACTAAGTTTGGGAGCAATCAGACAGCATTACTTGATCTTGCTTTTCCGGATAACTTTAGTAGATTACATGATAGGAGCAAAGAAACCCCCAAAGTAATGAAGCAACTTAGTCGCCTTTTCCCGAACAGAGTGACAATACAGCTGCCTCAGGATGAGGCTTTACTTTCTGATTGGAAGCAGCAGTTAGAACGTGACATTGAAATTATGAAAGCTCAGTCCAATGTTGTCAGCATTCGTTCAGTTCTCAACAGAATTGGATTGGATTGCCCTGATCTTGAGACTATTTGCATCAAAGATCAAACCCTAACTACTGAAAGTGTGGAAAAGATCATTGGTTGGTCTATAAGTTTCCATTTTATGCATTCATCTGAAGCTTCTATCAAAGACTCTAAGCTTGTGATATCTGCAGAAAGCATTAAATACGGGCTTAACATTCTACAAGGCATTCAAAATGAGAACAAGAACTTGAAAAAATCTCTGAAGGATGTGGTCACTGAGAATGAATTTGAGAAAAAACTGCTTGCTGATGTTATTCCACCAAATGATATTGGGGTCACATTTGATGATATTGGAGCTTTAGAAAATGTGAAGGACACCTTGAAGGAATTGGTCATGCTTCCTCTTCAGAGGCCTGAATTGTTTTGCAAAGGACAGCTGACTAAGCCTTGCAAGGGAATATTGCTTTTTGGGCCTCCTGGCACGGGAAAAACAATGCTTGCAAAGGCTGTAGCAACTGAAGCTGGAGCAAATTTCATTAACATTTCAATGTCCAGCATTACTTCCAAGTGGTTTGGTGAAGGAGAAAAATATGTCAAAGCAGTCTTCTCTCTGGCCAGCAAAATTGCTCCAAGTGTTATATTTGTTGACGAGGTTGATAGTATGTTAGGGAGACGTGAAAATCCGGGTGAGCATGAGGCTATGCGTAAAATGAAGAATGAGTTTATGGTTAATTGGGATGGTCTTCGTACAAAAGATAAAGAGCGCATAATTGTTCTTGCTGCTACAAACAGGCCTTTTGATCTTGACGAGGCTGTTATTAGGAGGCTTCCCCGGAGATTGATGGTTGATTTGCCTGATGCTCCAAACCGAGAAAAAATTATGAGAGTCATTTTAGCCAAAGAGGATTTGGCACCTGATGTGGATTTGGAAGCAATAGCAAATATGACTGATGGATATTCAGGGAGTGACCTAAAGAATCTGTGTGTCACAGCAGCTCACTGCCCAATAAGAGAGATCTTGGAGAAGGAAAAGAAGGAGAGAAGCTTAGCATTGGCTGAGAACAAACCTGTACCTGGATTGTGTAGCAGTGCTGACATTCGTTCTTTAAAGATGGAAGATTTTAGATATGCACATGAGCAGGTGTGCGCAAGCGTGTCATCGGAGTCAACAAATATGAATGAGCTACTCCAATGGAATGACCTGTATGGAGAAGGTGGATCCAGAAAGATGAGATCTTTGAGCTACTTCATGTGA	3795	0.4332	MVETRRGSSSSKRSLSSPSPPSNTKRSKVSEDASSTTLPSAGIIAPVNESGTGNESGEPELRPPDLPDTASLKSVDVCDAVEPEKSPSVPVEGEALVSPQCLGETAEKSKVAGSGAAPGRSKKRPTKSSPKAAWGKLLSQCSQNPHLCMSDPTFTVGQGRQCNLLLKDPTVGNVLCKLSHIEITDHSHHLHSVQRGGSSVALLEITGGKGAVQVNGETYRRNARLILSGGDEVVFGSSGKHAYIFQQLKNNNITTSGIPSSVSILEAQNAPINGMQVEARSGDPSAVAGASILASLSNLHKDLSLLSPPAKTCKNVRHNADISSLPSGHGDDIPDNEMKDATNNDETAGVFSDGKTVLASSTTANENQSVDSAEVDANVDADVGKMTAASCELRPLLRMLAGSCPDFDLSSSISKILEERRELRELLKDIDTPTILASTRRQAFKDSLQQRVLDAENIDVSFESFPYYLSDTTKNVLIASTYIHLKCNGFGKYASELSSVSPRILLSGPAGSDIYQETLSKALAKHFGARLLIVDSLSLPGGSPLKEVDSAKESSRPERPSVLAKRSAQTATLHHKKPASSVDAEIIGGSTLSSQAMLKQEFSTASSKGTTLKTGDRVKFVGNFPSGVSSLQNYPSRGPSYGSRGKVLLAFEDNGSSKIGVRFDKSIPDGNDLGGLCEDDRGFFCSANHLLRVDGSGGDDFDKVAINEIFEVVSDQSKNGALVLFIKDIERAMVGNSEVLKSKFESLPQNVVVIGSHAQLDSRKEKSQPGGLLFTKFGSNQTALLDLAFPDNFSRLHDRSKETPKVMKQLSRLFPNRVTIQLPQDEALLSDWKQQLERDIEIMKAQSNVVSIRSVLNRIGLDCPDLETICIKDQTLTTESVEKIIGWSISFHFMHSSEASIKDSKLVISAESIKYGLNILQGIQNENKNLKKSLKDVVTENEFEKKLLADVIPPNDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDKERIIVLAATNRPFDLDEAVIRRLPRRLMVDLPDAPNREKIMRVILAKEDLAPDVDLEAIANMTDGYSGSDLKNLCVTAAHCPIREILEKEKKERSLALAENKPVPGLCSSADIRSLKMEDFRYAHEQVCASVSSESTNMNELLQWNDLYGEGGSRKMRSLSYFM*	1265

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops6g02170	1264	ProSitePatterns	AAA-protein family signature.	1103	1122	IPR003960	GO:0005524\|GO:0016887
	Rops6g02170	1264	FunFam	p-loop nucleoside triphosphate hydrolase superfamily protein	958	1134	-	-
	Rops6g02170	1264	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	959	1237	IPR027417	-
	Rops6g02170	1264	Gene3D	-	958	1238	IPR027417	-
	Rops6g02170	1264	Gene3D	-	133	255	-	-
	Rops6g02170	1264	Gene3D	-	1132	1226	-	-
	Rops6g02170	1264	SMART	AAA_5	996	1133	IPR003593	GO:0016887
	Rops6g02170	1264	MobiDBLite	consensus disorder prediction	1	76	-	-
	Rops6g02170	1264	Pfam	ATPase family associated with various cellular activities (AAA)	1000	1129	IPR003959	GO:0005524\|GO:0016887
	Rops6g02170	1264	SUPERFAMILY	SMAD/FHA domain	134	239	IPR008984	GO:0005515
	Rops6g02170	1264	MobiDBLite	consensus disorder prediction	544	581	-	-
	Rops6g02170	1264	Coils	Coil	920	940	-	-
	Rops6g02170	1264	CDD	RecA-like_ATAD1	963	1129	-	-
	Rops6g02170	1264	MobiDBLite	consensus disorder prediction	1	55	-	-
	Rops6g02170	1264	PANTHER	AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED	442	1263	-	-
	Rops6g02170	1264	Pfam	AAA+ lid domain	1153	1189	IPR041569	-
	Rops6g02170	1264	MobiDBLite	consensus disorder prediction	105	132	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops6g02170	Rops-Chr6	39986833	40001614	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Rops6g02170	995	1200	Calmodulin-binding Proteins	AT3G56690	35.714	2.54e-31	131

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops6g02170	-		-	gmx:100801477	2097.78