Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02168 ATGGTTGAAACCAGACGCAGTTCCTCTTCTTCCAAGCGCTCTCTCTCTTCCCCTTCTCCTCCTTCCAACACCAAACGATCCAAGGTCTCCGAGGATGCCTCATCCACTCCGGTTAAAAAATCTGGAGAACCTGAGCTACGACCCCCTGATCTGCCTGATACGGCGTCGTCGTTGAAGCCTGTGGATGTTTGTGATGCGATGGAACCCGAAAAGTCACCTTCTTTGTCGGTTGAAGGCGAGGCTTTGGTGTCCCCTCAGCATATAGGTGAAACCATGGAGAAATCGAAGGAGACGGCGCCTGGTCGGTCGAAGAAACGCCCCACGAAATCGTGTCCCAAGGCTGCGTGGGGAAAGCTTCTTTCTCAGTGTTCTAAGAATCCTCACATGTCCATGTGTGATCCTCTCTACACTGTTGGTCAAGGCCGTCAATGTAATTTATGGCTTAAAGATCCCACTCTTAGTAATGTTTTGTGCAAGTTGAGGCACATTGAGCATGGAGGTTCATCTGTTGCATTACTGGAAATCGCAGGGGGTAAAGGTTCTGTTCAAGTTAATGGCAAGACTCATCGAAAGAATGCCCGTCTGATCTTAAGTGGAGGTGATGAGGTTGTCTTTGGTTCTTCTGGCGAGCATGCTTATATCTTTCAGCAGCTCATGTATAATAATATTGCTACTGCTGGTGTACCTTCTTCTGTGAGTATTTTAGAATCCCAAAGTGCTCCAATAAATGGAATGCAAGTTGAAGCTAGATCTGGAGATTCGTCGGCTGTTGCTAGAGCTTCATTGTTGGCCTCTTTATCTAATCATCTTTGTAAAGATTTATCTCTCATTCCACCTCCTGCTAAAACTGGCAAGAATGTGCAACAGAATACTGACATTTCATCGCTACCTTCTAGCCATGGGGATGATATTCCAGACAATGAAATAAAGGATACCACCAATAATGATGAAACGGCTGGAGTTTTTTCTGATGGAAAAACTGTTCTTGCATCTTCTACCACTGCTAATGAAAATCCTCCTAAGCTTGACGTGGAAGTCGATGCCAATGTGGATGCAGATGTTGGGAAGATGACTGCTGCAGAAACCTGCGGATTGAGGTCATTACTGCACATGCTTTCTGGCTCATGTCCTGAATTTGATTTAAGTGGTAGCATTTCCAAGATATTGGAAGAGCGAAGGGAAATAAAAGAACTCCTTAAAGATGTTGATACCCCAACAGTAGTGGCATCGACCAGGCGGCAAGCTTTTAAGGACAGTTTACAACAGAAAATTCTTGATGCTGAGAATATTGATGTCTCATTTGAAAGTTTCCCATATTATCTAAGTGATACAACAAAAAATGTCTTGATTGCTTCTACGTATATTCATTTGAAGTGCAATGGCTTTGGAAAATATGTTTCAGACCTTCCATCAGTGTCCCCATGGATATTGTTATCCGGTCCTGCAGGTTCGGAAATATATCAGGAGACTTTGTCCAAGGCCCTTGCAAAGCATTTTGGTGCCAGGCTACTGATTGTGGATTCTCTTTCTTGTGGAGCACCATTAAAGGAAATTGATTCCTCTAAAGAAAGTTCAAGGCCTGAAAGACCATCTGTGTTTACTAAGAGAAGTACCCAGGCTGCCGCAATACAGCATAAGCAACCATCTTCTACTGTTGATGCTGAGATTATAGGCAGATCAACATTAAGTTCTCAGGCTATGCTGAAGCAGGAGGTTTCTACTGCATCATCAAAAGGCAGTACTCTTAAAACAGGTGATCGAGTGAAATTTGTTGGTAACTTTCCTTCTGCTGTCTCATCGCTACAAAATTATCCTTCTAGGGGACCGAGCTATGGCTCCAGGGGAAAAGTTCTCCTTGCTTTTGAAGATAATGGATCTTCAAAAATTGGGGTTAGATTTGATAAATCAATTCCAGATGGCAATGATCTTGGAGGCCTTTGTGAAGATGATCGTGGCTTCTTTTGTTCTGCAAATCATTTGCTGCTGGTAGATGGTTCTGGAGGGGACGACTTTGACAAAGTTGCAATTAATGAAATCTTTGAGATTGCCTCTAATCTGAGTAAAAGTCGAGCACTAGTGTTGTTCATTAAAGATATAGAGAAGGCGATGGTTGGGAACACAGAAGTTTTAAAAAGTAAATTTGAAAGTTTGCCACAGAATGTTGTAGTAATTGGCTCACATATCCAGCTGGACAATCGTAAGGAGAAGACCCAACCTGGCAGCCTTCTGTTTACAAAGTTTGGGAGCAATCAGACGGCACTACTTGATCTCATGGATAACTTTAGTAGACTGCATGATAGGAGCAAAGAAACCCCCAAAGTAATGAAGCAACTTAGTCGTCTTTTCCCAAACAGAGTGACAATACAGCTGCCTCAGGATGAGGCTTTACTTTCTAATTGGAAGGAGCAGCTAGAAAGTGACATTGAAATTATGAAAGCTCAGACTAACATCGTCAGCATTCGCTCAGTTCTCAATAGAATTGGATTGGATTGCTCTGACCTTGAGACTCTTTGCATCAAAGATCAAACTCTAACGACTGAAAGTGTGGAGAAGATCATTGGCTGGGCTATAAGTTACCATTTTATGCATTCATCTGAAGCTTCTACTAAAGATTCTAAGCTTGTGACATCCGTGGAAAGCATTAAGCATGGGTTTAACATTCTACAGGGCATTCAAAATGAGAACAAAAACTTAAAAAAATCACTGAAGGATGTTGTTACTCAGAATGAGTTTGAGAAAAAACTTCTTTCTGATGTTATTCCACCAACTGATATTGGGATCAAATTCGATGATATCGGGGCTTTAGAAAATGTAAAGGACACCTTAAAGGAATTGGTCATGCTTCCTCTTCAGAGGCCTGAACTGTTTTGCAAAGGACAGCTGACTAAGCCCTGCAAGGGAATATTGCTTTTTGGGCCTCCTGGCACGGGAAAAACAATGCTTGCAAAGGCTGTAGCAACTGAAGCTGGAGCAAATTTTATTAACATTTCGATGTCCAGCATTACATCAAAGTGGTTTGGTGAAGGAGAAAAATATGTCAAAGCAGTCTTTTCTCTGGCCAGCAAAATTGCTCCAAGTGTTATTTTTGTTGATGAGGTTGATAGTATGTTAGGGAGACGCGAAAATCCTGGTGAGCATGAGGCAATGCGTAAAATGAAGAATGAGTTTATGGTTAATTGGGATGGTCTGCGTACAAAAGATAGAGAGCGTATTCTTGTTCTTGCTGCTACAAACAGGCCTTTCGATCTTGACGAGGCTGTTATTAGGAGGCTTCCGCGAAGATTAATGGTTAATTTACCAGATGCAACAAACAGAGAAAAAATTCTGAGGGTCATTTTAGCAAAAGAAGATTTTGCACCTGATGTTGATTTGGAAGCAATAGCAAATATAACTGATGGATATTCAGGAAGTGACCTAAAGAATCTCTGTGTCACAGCAGCTCACTGTCCAATAAGAGAGATCTTGGACAAGGAAAAGAGGGAGAGAAGCTTTGCATTGGCAGAGAACAAACCTTTACCTGGATTGTGTGGCAGTGCTGACATTCGTCCGTTAAAGATGGATGATTTTAGATATGCACATGAACAGGTGTGTGCAAGCGTGTCATCGGAGTCAACAAATATGAACGAGCTACTCCAATGGAATGACCTATATGGAGAAGGTGGATCCAGAAAAATGAGGTCTTTGAGCTATTTCATAGGATCCAGGTCCGAAGATACACTGTTTTTGCCGGCGACAAGGCAGGGAATGGGTTGGAAAGCAGCTGAGAAGCTCATTAGGCACTGGAAAGTTCTCAGAAGGGATAATGTCAGCCAACCCATATATTTAAGAAAAAAAGAAACAACAGTTAGTGTGAGAAAGAGTATGGAGGATGAGGGGTTGTTTATGTGTCATAGTTCAAGGTTCCTCTTTCCACCGTCGGAGAAGGACAACAAGAACCACCTCCACTATGCTCTTGTTATTCTCAACCAAGCCCTCCCCAGATTCGCTCCTCTACTTTCGGACCACGCACAGTTGCGACTCTGTGCCGATGGAGGTGCTAACCGTCTCTATGATGAAATGCCTCTTCTCTCCCATTCTCTTGTTCCACCCAGGTACAAGCCAGATGTAATCAAAGGTGACATGGATTCAATTCGGACACAAGTACCTGACTTCTATACAAAACTGGGAACAAAAATAATAGATGAATCTCATGATCAGGATACCTCAGATTTACACAAATGCATAACATACATACGTGACCAAACACCAGATATTGATAAATCAAAACTATGCATTCTTGTTACTGGAGCACTTGGTGGGCGATTTGACCACGAAATTGCAAATATCAATGTGTTGTGCCGTTTCTCGGACACTCGAATTATCCTTCTATCTGATGATTGCCTCGTGTACCTTCTTCCAAGGAATCACTGTCATAAGATTTTTGTTCAATCTTCTGTTGAGGGTCCACATTGTGGTTTAATTCCTATAGGGATGCCATCTGGAAGTTCTACAACCACTGGACTCAAGTGGGACCTTGATGACACTGAGATGAGATTTGGTGGTTTAGTAAGCACATCAAATGTTGTAAAAGGAGATATGGTAACAGTGCAGTCTGATTCAGATCTTCTTTGGACTATTTCTATTAAGAAGCCCTAG 4635 0.4218 MVETRRSSSSSKRSLSSPSPPSNTKRSKVSEDASSTPVKKSGEPELRPPDLPDTASSLKPVDVCDAMEPEKSPSLSVEGEALVSPQHIGETMEKSKETAPGRSKKRPTKSCPKAAWGKLLSQCSKNPHMSMCDPLYTVGQGRQCNLWLKDPTLSNVLCKLRHIEHGGSSVALLEIAGGKGSVQVNGKTHRKNARLILSGGDEVVFGSSGEHAYIFQQLMYNNIATAGVPSSVSILESQSAPINGMQVEARSGDSSAVARASLLASLSNHLCKDLSLIPPPAKTGKNVQQNTDISSLPSSHGDDIPDNEIKDTTNNDETAGVFSDGKTVLASSTTANENPPKLDVEVDANVDADVGKMTAAETCGLRSLLHMLSGSCPEFDLSGSISKILEERREIKELLKDVDTPTVVASTRRQAFKDSLQQKILDAENIDVSFESFPYYLSDTTKNVLIASTYIHLKCNGFGKYVSDLPSVSPWILLSGPAGSEIYQETLSKALAKHFGARLLIVDSLSCGAPLKEIDSSKESSRPERPSVFTKRSTQAAAIQHKQPSSTVDAEIIGRSTLSSQAMLKQEVSTASSKGSTLKTGDRVKFVGNFPSAVSSLQNYPSRGPSYGSRGKVLLAFEDNGSSKIGVRFDKSIPDGNDLGGLCEDDRGFFCSANHLLLVDGSGGDDFDKVAINEIFEIASNLSKSRALVLFIKDIEKAMVGNTEVLKSKFESLPQNVVVIGSHIQLDNRKEKTQPGSLLFTKFGSNQTALLDLMDNFSRLHDRSKETPKVMKQLSRLFPNRVTIQLPQDEALLSNWKEQLESDIEIMKAQTNIVSIRSVLNRIGLDCSDLETLCIKDQTLTTESVEKIIGWAISYHFMHSSEASTKDSKLVTSVESIKHGFNILQGIQNENKNLKKSLKDVVTQNEFEKKLLSDVIPPTDIGIKFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDRERILVLAATNRPFDLDEAVIRRLPRRLMVNLPDATNREKILRVILAKEDFAPDVDLEAIANITDGYSGSDLKNLCVTAAHCPIREILDKEKRERSFALAENKPLPGLCGSADIRPLKMDDFRYAHEQVCASVSSESTNMNELLQWNDLYGEGGSRKMRSLSYFIGSRSEDTLFLPATRQGMGWKAAEKLIRHWKVLRRDNVSQPIYLRKKETTVSVRKSMEDEGLFMCHSSRFLFPPSEKDNKNHLHYALVILNQALPRFAPLLSDHAQLRLCADGGANRLYDEMPLLSHSLVPPRYKPDVIKGDMDSIRTQVPDFYTKLGTKIIDESHDQDTSDLHKCITYIRDQTPDIDKSKLCILVTGALGGRFDHEIANINVLCRFSDTRIILLSDDCLVYLLPRNHCHKIFVQSSVEGPHCGLIPIGMPSGSSTTTGLKWDLDDTEMRFGGLVSTSNVVKGDMVTVQSDSDLLWTISIKKP* 1545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02168 1544 Gene3D - 115 225 - -
Rops6g02168 1544 SMART TPK_B1_binding_a_2_a 1471 1535 IPR007373 GO:0009229|GO:0030975
Rops6g02168 1544 SUPERFAMILY Thiamin pyrophosphokinase, substrate-binding domain 1463 1543 IPR036371 GO:0009229
Rops6g02168 1544 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 414 1231 - -
Rops6g02168 1544 MobiDBLite consensus disorder prediction 531 549 - -
Rops6g02168 1544 Pfam AAA+ lid domain 1121 1157 IPR041569 -
Rops6g02168 1544 ProSitePatterns AAA-protein family signature. 1071 1090 IPR003960 GO:0005524|GO:0016887
Rops6g02168 1544 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 926 1102 - -
Rops6g02168 1544 SMART AAA_5 964 1101 IPR003593 GO:0016887
Rops6g02168 1544 Pfam Thiamin pyrophosphokinase, catalytic domain 1331 1453 IPR007371 GO:0004788|GO:0005524|GO:0009229
Rops6g02168 1544 Pfam ATPase family associated with various cellular activities (AAA) 968 1097 IPR003959 GO:0005524|GO:0016887
Rops6g02168 1544 CDD RecA-like_ATAD1 931 1097 - -
Rops6g02168 1544 MobiDBLite consensus disorder prediction 1 37 - -
Rops6g02168 1544 MobiDBLite consensus disorder prediction 1 111 - -
Rops6g02168 1544 SUPERFAMILY Thiamin pyrophosphokinase, catalytic domain 1311 1461 IPR036759 GO:0004788|GO:0005524|GO:0009229
Rops6g02168 1544 MobiDBLite consensus disorder prediction 279 323 - -
Rops6g02168 1544 MobiDBLite consensus disorder prediction 282 301 - -
Rops6g02168 1544 Gene3D - 1100 1194 - -
Rops6g02168 1544 Gene3D - 1453 1543 - -
Rops6g02168 1544 FunFam Thiamine pyrophosphokinase 1454 1543 - -
Rops6g02168 1544 CDD TPK 1317 1539 IPR007371 GO:0004788|GO:0005524|GO:0009229
Rops6g02168 1544 Coils Coil 888 908 - -
Rops6g02168 1544 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 927 1206 IPR027417 -
Rops6g02168 1544 Gene3D - 927 1206 IPR027417 -
Rops6g02168 1544 MobiDBLite consensus disorder prediction 90 104 - -
Rops6g02168 1544 MobiDBLite consensus disorder prediction 518 549 - -
Rops6g02168 1544 Pfam Thiamin pyrophosphokinase, vitamin B1 binding domain 1471 1536 IPR007373 GO:0009229|GO:0030975
Rops6g02168 1544 Gene3D Thiamin pyrophosphokinase, catalytic domain 1315 1452 IPR036759 GO:0004788|GO:0005524|GO:0009229
Rops6g02168 1544 SUPERFAMILY SMAD/FHA domain 119 211 IPR008984 GO:0005515
Rops6g02168 1544 NCBIfam thiamine diphosphokinase 1318 1539 IPR006282 GO:0004788|GO:0006772
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02168 Rops-Chr6 39955300 39981770 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02168 963 1168 Calmodulin-binding Proteins AT3G56690 36.364 6.04e-32 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02168 - - gmx:100801477 1956.8