Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02162 ATGGCATTTGCAGATGCAACTTGGATCACTTCCCTCTCATGTTCATCCCCAGGAGATGCATTTCCCGGAACTTCAACTCTACCTCAGTGGCTAAGATTCATTTTCCTCTCCCCATGTCCTCAGAGAGCTCTGTTGTCTGCTGTTGATGTTCTACTCCTGTTCACCCTATTTGTGTTTGCCATCATTAAGCTCTATTCTAGGTTCACTTCCAATGGCAACCCAAACTCCGAGCTCAACAAGCCCCTTATCAGAAATACCAGAGCTTCTGAAGGAACAACTATATGGTTTAAGCTAACTCAAACTGCAACGGCTGTTTTAACTATATTGTACACTGTTGCATCCATTTTGGTATTTTGCAGTTCCACTCAGGTACCATGGAAGCTAGTTGATGGTTTCTTTTGGTTAGTTCAGGCCATAACCCAACTAGTCCTTGCAATCTTAATCATCCACGAGAAAAGATTTGAAGCTGTTACTCACCCTTTATCGCTTCGAATTTATTGGATTGCAAATTTCGTCATTGTTTCTTTGTTCTCAGCTTCTGGGGTTATACGTTTGGTCTCTGTGGATGTGGGAGATAGCAACTACTTCAGCTTTATGGTTGATGACACAATCTCTTTGATTTCTCTTCCTCTGTCACTTTTTCTGCTTTGTATTGCGATTAAAGGATCCACCGGGATTGTGTCCGGTGAAGAAAAGCAACCTCTTATTGATGAGGAAACCAAACTATATGATCCAACTGTGACCAAAGCCAACGTTACTGGCTTTGCTTCAGCTTCTGCAATATCCAAGGCCTTTTGGATTTGGTTGAACCCCTTATTGAGTAAAGGGTATAAGTCACCTCTCAATATTGATGAAATTCCAATCCTTTCTCCACAGGATAGAGCTGAAAGGATGTCAGTTATCTTTGAATCGAAATGGCCTAAATCAGATGAGAAATCGAAGCACCCAGTTCGAACCGCGTTGGTTCGTTGCTTCTGGAAGGAGATAGCTTTCACTGCGTTCCTTGCTGTTGTTCGGCTATGTGTCATGTTTGTAGGGCCAGTTCTCATTCAAGATTTTGTTGATTACACTGCAGGGAAAGGTAGCTCTGTGTATGAAGGATACTATCTGGTGTTGATTCTCCTTTGTGCAAAATTTGTTGAAGTTTTGACTACTCACCATTTCAACTTCAACTCTCAGAAGCTTGGGATGCTTATCAGATGCACTCTCATCACTTCTTTGTACAAGAAGGGGTTGAGACTATCATGCTCTTCTAGGCAAGATCATGGTGTTGGGCCTATTGTGAATTACATGGCTGTTGATACTCAACAACTTTCTGATATGATGCTTCAGCTACATGCCGTGTGGATGATGCCATTTCAACTCGGTATTGGCTTATTTTTGCTTTACAATTGTCTTGGTGCCTCAGTAGTTACAGCATTGATCGGACTTATTCTTGTTCTCGCGTTTATTGTTGTGTCTACTCGAAAGAACAAGCGTTACCAGTTTAGTGCAATGACGAATCGTGATTCAAGAATGAAAGCTGTTAATGAGATGCTCAATTACATGCGTGTTATCAAGTTCCAGGCATGGGAAGAGCATTTCAATGATAGAATTTTGGATTTCCGTAAGTCAGAATTTGGGTGGATTTCCAAATTTATGTTCTCAGTTTGTGGCAATATTGTTGTGTTGTGGAGCGCCCCATTATTGATATCAACTCTCACGTTTGGTACGGCTATTTTGCTTGGAGTTCCACTTGATGCAGGGACGGTTTTCACCACAACAACTGTGTTTAAGATCCTACAGGAACCTATGAGGACCTTTCCTCAGTCCATGATATCACTTTCCCAAGCAATTGTATCACTTGGGAGGTTAGATAGGTACATGTCTAGTAGGGAATTGTCTGATGATTCAGTTGTGCGAGAGGAAGGATGTGATGAACAAATTGCTGTAGAGGTAAAAAATGGGACCTTTAGCTGGGATGATGATGGCGAAGAGCAGGACTTGAAAAATATTAATTTAGAGATCAACAAGGGAGAGCTTACGGCTATTGTTGGGACTGTGGGGTCAGGAAAGTCTTCTCTCCTTGCATCAATTCTTGGTGAGATGCACAGAATTGCTGGAAAGGTTCAAGTTTGTGGGACTACTGCTTATGTTGCACAAACAGCTTGGATTCAAAATGGGACCATTGAAGAAAACATTCTCTTTGGTTTACCAATGAACAGACAGAAGTACAATGAAGTTCTTAGGGTGTGTTGCTTGGAAAAAGACTTGGAAATGATGGAGTATGGGGATCAAACAGAGATTGGAGAGCGTGGCATCAACCTAAGTGGGGGCCAGAAGCAGCGTATACAACTTGCCAGGGCTGTATACCAAGATTGTGATACATATCTTCTTGATGATGTCTTCAGTGCTGTTGATGCACATACTGGCACCGAAATATTTAAGGAATGCGTGAGGGGAGCTCTAAAAGGAAAGACTATTGTTCTTGTAACACACCAAGTTGACTTCCTACATAATGTGGATCTTATAGTGGTGATGAGGGACGGAACGGTAGTCCAATCAGGGAAGTACAATGATCTACTTGATTCTGGAATGGATTTTAGTGCTCTAGTAGCAGCACATGAGACCTCTATGGAACTGGTAGAACAGGGTGCGGCCATGCCCGGTGAAAATTTGGATAGACCTATAAAGTCTCCCAAGGCAGCTGCTAATCACAGAGAAGCCAATGGTGAGAGTAATTCTCTTGACCAGCCCAAGTCTGGCAAGGAAAGTTCTAAACTGATCAAAGAAGAAGAGAGAGAAACTGGGAAAGTAAGCTTACATATCTATAAACTCTACTGCACTGAGGCTTTTGGGTGGTGGGGCATTATAGTAGTAGTCCTTCTTTCTTTCTTGTGGCAAGCATCTATGATGGCAAGTGATTATTGGCTGGCGTATGAAACCTCTGAAGAGCGTGCTCAGTTGTTTAATCCTTCTCTATTTATTTCCATCTACGCAATTATTGCTGCAGTTTCAGTTATTTTGGTAGCGCTAAGAGCCTACTCTACTACAATCTTGGGGTTAAAGACAGCACAAATCTTCTTCTCTCAAATTCTTTATAGCATCTTGCATGCTCCCATGTCTTTCTTCGACACTACTCCATCGGGGAGAATTCTAAGCAGGGCATCCACCGATCAGACCAATGTTGATGTCTTTATCCCATTGTTTCTGAATTTTGTGGTGGCTATGTATATTACAGTGATCAGCATCTTCATAGTCACATGTCAAAATGCTTGGCCAACAACTTTCTTGCTAGCCCCTCTTCTTTGGTTGAACATTTGGTACCGGGGCTATTTTCTTGCTTCATCTCGTGAGTTAACTCGCCTGGATTCAATTACAAAAGCGCCTGTCATTCATCATTTCTCTGAAAGCATTTCCGGGGTCATGACAATCCGTGCATTCAGAAAGCAGAAGGAATTTTGTGTAGAAAATATCAAACGAGTGAATGCTAATTTGCGAATGGATTTCCACAACTTCAGTTCCAATGCGTGGTTGGGTTTCCGCTTAGAATTACTTGGAAGCTTAGTTTTCTGCATTTCTGCTATGTTCATGATCGTGTTACCCAGCAATATCATAAAGCCAGAAAACGTTGGTTTATCTCTCTCTTATGGAATGTCATTAAATTCTGTGTTGTTCTGGGCTATATACATGAGTTGTTTCATTGAAAACAAGATGGTATCTGTTGAGAGGATAAAGCAGTTCACAAATATCCCATCAGAAGCAGCATGGAACGTTAAGGATCGTCTGCCTCCTTCAAATTGGCCTGGTCAAGGCCATGTTGATATCAAAGACTTGCAGGTCAGATATCGTCCAAACACTCCTTTGGTTCTTAAAGGCATTACTTTGAGCATTAGTGGAGGAGAAAAGGTTGGTGTTGTTGGTCGAACAGGGAGTGGAAAATCAACTTTAATTCAAGTTTTCTTCAGGCTGGTGGAACCTACAGGAGGGAAAATAATCATTGATGGCATTGACATAACCGCCTTGGGGCTTCATGATCTTAGATCTCGGTTTGGCATCATCCCTCAAGAGCCCGTCCTTTTTGAAGGAACCGTCAGAAGTAACATTGATCCAACTGGACAGCATACAGATGAAGAGATATGGAAGAGTTTGGAACGTTGTCAACTAAAAGATGCAGTGGCTTCTAAGGCTGAGAAACTTGACTCTTTAGTGGTTGATAATGGAGATAACTGGAGTGTGGGGCAGAGGCAGTTACTTTGTTTAGGGCGTGTTATGCTTAAGCAAAGCAGGCTATTGTTCATGGATGAGGCAACAGCTTCTGTTGATTCTCAAACCGATGCTGTAATTCAAAAGATCATCCGAGAGGATTTTGCAGCCCGTACCATCATCAGCATTGCTCATAGAATACCAACAGTCATGGACTGTGATAGAGTTTTAGTTGTAGATGCAGGGCTGGCTAAAGAATTTGACAAACCTTCCAACTTGCTTCAGAGGCCATCACTCTTTGGGGCATTAGTTCAAGAGTATGCCAACCGCTCCTCTGGACTATAA 4530 0.4212 MAFADATWITSLSCSSPGDAFPGTSTLPQWLRFIFLSPCPQRALLSAVDVLLLFTLFVFAIIKLYSRFTSNGNPNSELNKPLIRNTRASEGTTIWFKLTQTATAVLTILYTVASILVFCSSTQVPWKLVDGFFWLVQAITQLVLAILIIHEKRFEAVTHPLSLRIYWIANFVIVSLFSASGVIRLVSVDVGDSNYFSFMVDDTISLISLPLSLFLLCIAIKGSTGIVSGEEKQPLIDEETKLYDPTVTKANVTGFASASAISKAFWIWLNPLLSKGYKSPLNIDEIPILSPQDRAERMSVIFESKWPKSDEKSKHPVRTALVRCFWKEIAFTAFLAVVRLCVMFVGPVLIQDFVDYTAGKGSSVYEGYYLVLILLCAKFVEVLTTHHFNFNSQKLGMLIRCTLITSLYKKGLRLSCSSRQDHGVGPIVNYMAVDTQQLSDMMLQLHAVWMMPFQLGIGLFLLYNCLGASVVTALIGLILVLAFIVVSTRKNKRYQFSAMTNRDSRMKAVNEMLNYMRVIKFQAWEEHFNDRILDFRKSEFGWISKFMFSVCGNIVVLWSAPLLISTLTFGTAILLGVPLDAGTVFTTTTVFKILQEPMRTFPQSMISLSQAIVSLGRLDRYMSSRELSDDSVVREEGCDEQIAVEVKNGTFSWDDDGEEQDLKNINLEINKGELTAIVGTVGSGKSSLLASILGEMHRIAGKVQVCGTTAYVAQTAWIQNGTIEENILFGLPMNRQKYNEVLRVCCLEKDLEMMEYGDQTEIGERGINLSGGQKQRIQLARAVYQDCDTYLLDDVFSAVDAHTGTEIFKECVRGALKGKTIVLVTHQVDFLHNVDLIVVMRDGTVVQSGKYNDLLDSGMDFSALVAAHETSMELVEQGAAMPGENLDRPIKSPKAAANHREANGESNSLDQPKSGKESSKLIKEEERETGKVSLHIYKLYCTEAFGWWGIIVVVLLSFLWQASMMASDYWLAYETSEERAQLFNPSLFISIYAIIAAVSVILVALRAYSTTILGLKTAQIFFSQILYSILHAPMSFFDTTPSGRILSRASTDQTNVDVFIPLFLNFVVAMYITVISIFIVTCQNAWPTTFLLAPLLWLNIWYRGYFLASSRELTRLDSITKAPVIHHFSESISGVMTIRAFRKQKEFCVENIKRVNANLRMDFHNFSSNAWLGFRLELLGSLVFCISAMFMIVLPSNIIKPENVGLSLSYGMSLNSVLFWAIYMSCFIENKMVSVERIKQFTNIPSEAAWNVKDRLPPSNWPGQGHVDIKDLQVRYRPNTPLVLKGITLSISGGEKVGVVGRTGSGKSTLIQVFFRLVEPTGGKIIIDGIDITALGLHDLRSRFGIIPQEPVLFEGTVRSNIDPTGQHTDEEIWKSLERCQLKDAVASKAEKLDSLVVDNGDNWSVGQRQLLCLGRVMLKQSRLLFMDEATASVDSQTDAVIQKIIREDFAARTIISIAHRIPTVMDCDRVLVVDAGLAKEFDKPSNLLQRPSLFGALVQEYANRSSGL* 1510
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02162 1509 CDD ABC_6TM_ABCC_D2 950 1242 IPR044726 GO:0140359
Rops6g02162 1509 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 256 1503 - -
Rops6g02162 1509 CDD ABCC_MRP_domain2 1265 1485 - -
Rops6g02162 1509 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1260 1500 IPR027417 -
Rops6g02162 1509 MobiDBLite consensus disorder prediction 901 915 - -
Rops6g02162 1509 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 644 867 IPR003439 GO:0005524
Rops6g02162 1509 CDD ABC_6TM_ABCC_D1 331 618 IPR044746 GO:0140359
Rops6g02162 1509 Gene3D - 642 874 IPR027417 -
Rops6g02162 1509 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 330 610 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops6g02162 1509 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1267 1501 IPR003439 GO:0005524
Rops6g02162 1509 MobiDBLite consensus disorder prediction 883 922 - -
Rops6g02162 1509 SUPERFAMILY ABC transporter transmembrane region 947 1247 IPR036640 GO:0005524|GO:0016020
Rops6g02162 1509 Pfam ABC transporter 1284 1432 IPR003439 GO:0005524
Rops6g02162 1509 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 642 865 IPR027417 -
Rops6g02162 1509 Pfam ABC transporter 662 795 IPR003439 GO:0005524
Rops6g02162 1509 Gene3D ABC transporter type 1, transmembrane domain 913 1248 IPR036640 GO:0005524|GO:0016020
Rops6g02162 1509 Gene3D ABC transporter type 1, transmembrane domain 310 626 IPR036640 GO:0005524|GO:0016020
Rops6g02162 1509 FunFam ABC transporter C family member 4 627 885 - -
Rops6g02162 1509 Pfam ABC transporter transmembrane region 951 1208 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops6g02162 1509 Pfam ABC transporter transmembrane region 331 598 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Rops6g02162 1509 FunFam ABC transporter C family member 3 1250 1501 - -
Rops6g02162 1509 Gene3D - 1250 1499 IPR027417 -
Rops6g02162 1509 FunFam ABC transporter C family member 5 913 1248 - -
Rops6g02162 1509 ProSitePatterns ABC transporters family signature. 769 783 IPR017871 GO:0005524|GO:0016887
Rops6g02162 1509 CDD ABCC_MRP_domain1 644 844 - -
Rops6g02162 1509 SUPERFAMILY ABC transporter transmembrane region 321 623 IPR036640 GO:0005524|GO:0016020
Rops6g02162 1509 FunFam ABC transporter C family member 10 313 626 - -
Rops6g02162 1509 SMART AAA_5 1293 1477 IPR003593 GO:0016887
Rops6g02162 1509 SMART AAA_5 671 844 IPR003593 GO:0016887
Rops6g02162 1509 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 951 1230 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Rops6g02162 Rops-Chr6 39892387 39900787 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02162 644 860 Calmodulin-binding Proteins AT2G36910 31.330 3.47e-24 108