Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02130 ATGCGGTCATCCTTCCTCAAGCGACTTTTCGTGAGCAAAATCAACAAGCCTCCTCTATCTCTCTCTAGATTGATTCGTTACATGAAGGCAAAGCAAGATAAGATTGCCGTAGTTGTTGGAGTGGTGACATCATCGGATTTAAGATGGGTAACTGCCCTTAGGTTTACAGAAACTGCCCGAGCTAGAATTGAGAAGGCTGGTGTGGAGTGCCTCACATTTGATCAACACTGTCTAAAAACAGAGGAGAGACAAGGATGGATCAGTGGGAGAGGAGATTGGACGAGGAGTGAGATAGGAGGAAGGTTCTTGAAGGCTGAATTGGGGGTCTTGAAGCCTCTGTGA 342 0.4649 MRSSFLKRLFVSKINKPPLSLSRLIRYMKAKQDKIAVVVGVVTSSDLRWVTALRFTETARARIEKAGVECLTFDQHCLKTEERQGWISGRGDWTRSEIGGRFLKAELGVLKPL* 114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02130 113 Pfam Ribosomal protein 60S L18 and 50S L18e 5 84 IPR021131 -
Rops6g02130 113 SUPERFAMILY Ribosomal proteins L15p and L18e 5 84 IPR036227 -
Rops6g02130 113 Gene3D - 2 108 - -
Rops6g02130 113 PANTHER 60S RIBOSOMAL PROTEIN L18 5 98 IPR000039 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02130 Rops-Chr6 39604637 39606439 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02130 5 78 Cytoplasmic Ribosomal Protein Gene Family AT2G47570 66.667 7.19e-28 99.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02130 K02883 - han:110937072 109.383