Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02129 ATGTTCATGAATCCAGAAGCTCAACCAAGTTATGCCCGTAATGGCAAGGTCATGCTTTTTTCCACTGTCCTTCTCTTCCTAATAATAGTCGTTATCACTTTCCTTCACACATGCCGTCACACGTGCTTCTCTCATTGCCGTCGCCGTCATCGTCTGCGAACTAATTCCACCGCCTCTTCCCTTCACCCTTCCGTTCTCAACTTCCTTCCCACCTTCACTTTCTCCTCCGACACACGCCACCGCCTTCTCCACGACTGCGCAGTCTGCTTATCGGAATTTGCAGACGGCGATGAAGGCCGTGTCCTTCCAAACTGTAACCACGCTTTTCACTCCCAGTGCATCGATGCATGGTTCCGCTCTCACTCCAACTGTCCACTTTGCCGAACCCCGGTTCATCCACGAGCCGAACCGGTCCAACCACAGGTTATGGCGTCCTCTAGTAATGAACCGGGTTCGGTGGGTTTATCGTCTTTTCCTGCGAGGAAGTCATTGGAGCTAGTAGGCATAAAAGTGGAGCTTAGAGACTCGGATCCTGAGTCGGGTCGGGTACCCCGCGGATAA 561 0.5241 MFMNPEAQPSYARNGKVMLFSTVLLFLIIVVITFLHTCRHTCFSHCRRRHRLRTNSTASSLHPSVLNFLPTFTFSSDTRHRLLHDCAVCLSEFADGDEGRVLPNCNHAFHSQCIDAWFRSHSNCPLCRTPVHPRAEPVQPQVMASSSNEPGSVGLSSFPARKSLELVGIKVELRDSDPESGRVPRG* 187
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02129 186 Pfam Ring finger domain 85 128 IPR001841 -
Rops6g02129 186 ProSiteProfiles Zinc finger RING-type profile. 86 128 IPR001841 -
Rops6g02129 186 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 8 139 - -
Rops6g02129 186 SMART ring_2 86 127 IPR001841 -
Rops6g02129 186 FunFam E3 ubiquitin-protein ligase ATL6 47 134 - -
Rops6g02129 186 CDD RING-H2_EL5-like 85 128 - -
Rops6g02129 186 SUPERFAMILY RING/U-box 85 137 - -
Rops6g02129 186 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 62 136 IPR013083 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Rops6g02129 Rops-Chr6 39596272 39596832 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02129 10 135 Rapid Response to Elicitors AT3G16720 41.497 2.59e-29 108
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02129 - - gmx:102669188 224.172