Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Rops6g02129 | ATGTTCATGAATCCAGAAGCTCAACCAAGTTATGCCCGTAATGGCAAGGTCATGCTTTTTTCCACTGTCCTTCTCTTCCTAATAATAGTCGTTATCACTTTCCTTCACACATGCCGTCACACGTGCTTCTCTCATTGCCGTCGCCGTCATCGTCTGCGAACTAATTCCACCGCCTCTTCCCTTCACCCTTCCGTTCTCAACTTCCTTCCCACCTTCACTTTCTCCTCCGACACACGCCACCGCCTTCTCCACGACTGCGCAGTCTGCTTATCGGAATTTGCAGACGGCGATGAAGGCCGTGTCCTTCCAAACTGTAACCACGCTTTTCACTCCCAGTGCATCGATGCATGGTTCCGCTCTCACTCCAACTGTCCACTTTGCCGAACCCCGGTTCATCCACGAGCCGAACCGGTCCAACCACAGGTTATGGCGTCCTCTAGTAATGAACCGGGTTCGGTGGGTTTATCGTCTTTTCCTGCGAGGAAGTCATTGGAGCTAGTAGGCATAAAAGTGGAGCTTAGAGACTCGGATCCTGAGTCGGGTCGGGTACCCCGCGGATAA | 561 | 0.5241 | MFMNPEAQPSYARNGKVMLFSTVLLFLIIVVITFLHTCRHTCFSHCRRRHRLRTNSTASSLHPSVLNFLPTFTFSSDTRHRLLHDCAVCLSEFADGDEGRVLPNCNHAFHSQCIDAWFRSHSNCPLCRTPVHPRAEPVQPQVMASSSNEPGSVGLSSFPARKSLELVGIKVELRDSDPESGRVPRG* | 187 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Rops6g02129 | 186 | Pfam | Ring finger domain | 85 | 128 | IPR001841 | - | |
Rops6g02129 | 186 | ProSiteProfiles | Zinc finger RING-type profile. | 86 | 128 | IPR001841 | - | |
Rops6g02129 | 186 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE ATL42 | 8 | 139 | - | - | |
Rops6g02129 | 186 | SMART | ring_2 | 86 | 127 | IPR001841 | - | |
Rops6g02129 | 186 | FunFam | E3 ubiquitin-protein ligase ATL6 | 47 | 134 | - | - | |
Rops6g02129 | 186 | CDD | RING-H2_EL5-like | 85 | 128 | - | - | |
Rops6g02129 | 186 | SUPERFAMILY | RING/U-box | 85 | 137 | - | - | |
Rops6g02129 | 186 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 62 | 136 | IPR013083 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Rops6g02129 | Rops-Chr6 | 39596272 | 39596832 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Rops6g02129 | 10 | 135 | Rapid Response to Elicitors | AT3G16720 | 41.497 | 2.59e-29 | 108 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Rops6g02129 | - | - | gmx:102669188 | 224.172 |