Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02126 ATGGCTTCTAAGTTACGTAGTTCCCTCCTGACAATGTTGATATGTATCATTCTCCTCCCACACTTGTTTTCCTCTCTAGCTTTGGCAGACATCCCTCCCACCACTCGTGTCTCTCCTGGAACCATATGCAAATCCACCCCAGACCCATCTTATTGCAATTCTGTTCTCCCTCCCCAAAATGGCAATGTTTATGATTATGGGCGATTCTCTGTGAGAAAGTCCATATCACAGGCAAGGAATTTCTTGAACTTGGTTAACAAATATCTCCAACGCCGTTCCACTCTTTCCACCGCCGCCATCCATGCACTCGAAGATTGCCAGACCCTTGGTGAGCTCAACTTAGATTTTCTCTTGAGTTCCTTCCAAACAGTGAACAATCAAACTAGGTTCCTACCCAGTTTGGAAGCTGATGATATCCAAACCTTGCTAAGTGCCATCCTAACCAACCAACAAACCTGCTTGGAAGGCCTCGAAGCCACTGCTTCAGCTTGGAGCGTGAAAAAAGGACTCTCTGTTCCGCTTTCTAATGACACCAAGCTCTACAGTGTCTCTCTTGCTCTCTTCACAAAAGGGTGGGTTCCCAGCAACAAAACAAAAGCCAATAATACAGCATTTCAACCAACCATGAACCAATTTGTATTTCGAAATGGGCATTTGCCCCTCAAGATGTCAAGTAGAACTCGCTCTATCTACGAGTGGGTGAGCCGGAGAAAACTGCTTCAGTCTACAAAAGGTGATCATGCGGTTGTGGTGGTGAGAGACATCGTGACGGTGAGCCAAGATGGAAGTGGAAACTTCACCACCATAAACGACGCCGTAGCTGCAGCGCCAAACAAGACTTCCTCAACGGACGGGTACTTTCTGATCTATGTGACTGCGGGTGTCTACGAGGAAAATGTGACTATTGATAAGAAAAAGACGTACTTAATGATGGTTGGAGCTGGCATCAACAAGACAATTATTACAGGCAATCGCAGTGTCGTTGATGGCTGGACAACCTTCAAGTCTGCAACCTTTGCTGCAACATATCTGGGGAGGCCATGGAAGCAGTACTCGAGGACCGTTTATATGCAGAGTTTTATGGACAGTGTGATCGATGCTGCAGGGTGGCGTGAATGGGATGGTGATTTTGCTTTGAGCACTTTGTATTATGCAGAGTTTAACAACAGTGGACCAGGATCTAGCACTGACAACAGAGTGACATGGCAGGGTTACCACGTTATTAATGCCACAGATGCTGCAAATTTTACAGTCTCTGCCTTCTTGCTTGGAGATGACTGGCTGCCAAAGACAGGGGTGACTTACGTTAGTGACTTGATATAG 1323 0.4626 MASKLRSSLLTMLICIILLPHLFSSLALADIPPTTRVSPGTICKSTPDPSYCNSVLPPQNGNVYDYGRFSVRKSISQARNFLNLVNKYLQRRSTLSTAAIHALEDCQTLGELNLDFLLSSFQTVNNQTRFLPSLEADDIQTLLSAILTNQQTCLEGLEATASAWSVKKGLSVPLSNDTKLYSVSLALFTKGWVPSNKTKANNTAFQPTMNQFVFRNGHLPLKMSSRTRSIYEWVSRRKLLQSTKGDHAVVVVRDIVTVSQDGSGNFTTINDAVAAAPNKTSSTDGYFLIYVTAGVYEENVTIDKKKTYLMMVGAGINKTIITGNRSVVDGWTTFKSATFAATYLGRPWKQYSRTVYMQSFMDSVIDAAGWREWDGDFALSTLYYAEFNNSGPGSSTDNRVTWQGYHVINATDAANFTVSAFLLGDDWLPKTGVTYVSDLI* 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02126 440 CDD PMEI-like_3 41 192 - -
Rops6g02126 440 Pfam Plant invertase/pectin methylesterase inhibitor 41 187 IPR006501 GO:0004857
Rops6g02126 440 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 41 190 IPR035513 -
Rops6g02126 440 SUPERFAMILY Pectin lyase-like 251 437 IPR011050 -
Rops6g02126 440 SMART PMEI_2 34 187 IPR006501 GO:0004857
Rops6g02126 440 FunFam Pectinesterase 40 190 - -
Rops6g02126 440 NCBIfam pectinesterase inhibitor domain 8 189 IPR006501 GO:0004857
Rops6g02126 440 Pfam Pectinesterase 341 425 IPR000070 GO:0030599|GO:0042545
Rops6g02126 440 Gene3D - 250 341 IPR012334 -
Rops6g02126 440 Gene3D - 342 440 IPR012334 -
Rops6g02126 440 Gene3D Invertase/pectin methylesterase inhibitor family protein 40 190 IPR035513 -
Rops6g02126 440 PANTHER PECTINESTERASE 22 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02126 Rops-Chr6 39585488 39588079 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02126 342 440 Carbohydrate Esterase AT1G02810 71.717 9.74e-46 165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02126 K01051 - gmx:100790729 514.998