Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02125 ATGGCTTTTAAGAACTTCTCTGTTCTTACATTCTCCTTTTCCTTCCTGGTCTTGGCATCATTGTCCATTGCAGATGCTGGTTCATCCTCCATGGTTCCACCGGAAACCATTTGCAGCTCCACTGTAGACCCTGCTTATTGCAAAACTGTGCTTACTAATCAAAATGTCAGCATCTTTGACTTTGGCCGCATTTCTTTTCGAAAGTCCATGTCCCAGTCCCGCAAGTTCTTGAACTTAGTGAGCTCATATCTTCAAGGTAGCTCGTCTTTGTCTCGATCCACAATTCGCGCTCTTGAAGATTGCCGATTCCTTGCTGAACAAAGTTTAGAATACTTATCAAACGCCTATGCCACGGCCAATCAAGCCAGTGATGTTCTTCCCACTTCTCAAGCTGAAGATTATGAAACAGTCCTCAGTGCCGTTTTGACTAACCAACAGACATGTTCGGATGGCCTACAGACTACAGCTTCTGATCAAAGAGTGAAGAACGACCTGTCATCGTTACTCTCCAATGACAACAAGCTTCACAGTGTCACCCTGGCCTTGTTCCAAAAGGGTTGGGTGCCTGAGAAGAAAATCATAAGATCATGGCAACAAAATGGGAAAAATTTGAATTTCAAAAATGGTCGTTTACCATTGAAGATGTCTAATAAAGCACGTGCTATTTATGATTCCGCTAGACGCCATTGGAGAAAACTACTTCAAACGGACACCGACGACGAAAGCGTTGTCATAAGCGACATTGTGGTGGTTAGTCAGGATGGAAGCGGAAACTTCACCACCATCAATGATGCAATAACTGCTGCACCAAATAACTCAGTTGCTAGTAATGGCTACTTCTTGATTATGATCAACGAAGGCGTGTATCAAGAGTATGTATCCATAGACAAAACAAAGAAGTACTTGATGCTAATTGGAGAAGGAATCAATAGGACAATTATCACTGGCAATCACAATGTTGTCGATGGTTTTACAACATTCAACTCGGCAACATTTGCCGGTGATTTGGCTCCTAACGTGGGTACCGTGCAAACATACCTTGGAAGACCATGGAAAGAATATTCAAGGACAGTTGTTATTCAGTCCTTCATGGATAGTTTCATAAACCCTGCTGGTTGGAGTGAATGGAGTGGTGATTTTGCGTTGAGCACGTTGTACTATGCAGAATACGATAACAGGGGACCCGGTTCAAACACTGCTAATCGAGTGACGTGGACTGGTTATCATGTTATCAACGCTACTGATGCAGCCAATTTTACTGTGTCTAACTTCTTGAGCGGGGATGATTGGCTTCCTCGAACTGCTGTCCCGTACTTGAGTGGATTGATATAG 1332 0.4332 MAFKNFSVLTFSFSFLVLASLSIADAGSSSMVPPETICSSTVDPAYCKTVLTNQNVSIFDFGRISFRKSMSQSRKFLNLVSSYLQGSSSLSRSTIRALEDCRFLAEQSLEYLSNAYATANQASDVLPTSQAEDYETVLSAVLTNQQTCSDGLQTTASDQRVKNDLSSLLSNDNKLHSVTLALFQKGWVPEKKIIRSWQQNGKNLNFKNGRLPLKMSNKARAIYDSARRHWRKLLQTDTDDESVVISDIVVVSQDGSGNFTTINDAITAAPNNSVASNGYFLIMINEGVYQEYVSIDKTKKYLMLIGEGINRTIITGNHNVVDGFTTFNSATFAGDLAPNVGTVQTYLGRPWKEYSRTVVIQSFMDSFINPAGWSEWSGDFALSTLYYAEYDNRGPGSNTANRVTWTGYHVINATDAANFTVSNFLSGDDWLPRTAVPYLSGLI* 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02125 443 NCBIfam pectinesterase inhibitor domain 6 184 IPR006501 GO:0004857
Rops6g02125 443 SUPERFAMILY Pectin lyase-like 244 441 IPR011050 -
Rops6g02125 443 Pfam Pectinesterase 335 428 IPR000070 GO:0030599|GO:0042545
Rops6g02125 443 Pfam Pectinesterase 249 333 IPR000070 GO:0030599|GO:0042545
Rops6g02125 443 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 36 185 IPR035513 -
Rops6g02125 443 Gene3D Invertase/pectin methylesterase inhibitor family protein 35 185 IPR035513 -
Rops6g02125 443 FunFam Pectinesterase 35 185 - -
Rops6g02125 443 Gene3D - 243 336 IPR012334 -
Rops6g02125 443 Gene3D - 337 443 IPR012334 -
Rops6g02125 443 Pfam Plant invertase/pectin methylesterase inhibitor 35 181 IPR006501 GO:0004857
Rops6g02125 443 PANTHER PECTINESTERASE 21 333 - -
Rops6g02125 443 SMART PMEI_2 29 182 IPR006501 GO:0004857
Rops6g02125 443 CDD PMEI-like_3 36 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02125 Rops-Chr6 39574623 39576452 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02125 333 443 Carbohydrate Esterase AT4G02330 65.766 2.16e-46 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02125 K01051 - nnu:104599379 440.269