Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02124 ATGGCTTTTAAGCACTCATCTGTTCTTACGTTCTCCTTTTACTATATGCTTTCCTTCATGATCTTGGCATCATTGTGCATTGCAGATGCTGGTTCATCCTCCATGGTTCCACCGGAAACCATTTGCAGCTCCACTGTAGACCCTGCTTATTGCAAAACTGTGCTTACTAATCAAAATGGCAGCATCTTTGACTTTGGCCGCATTTCTTTTCGAAAGTCCATGTCCCTGTCCCGCAAGTTCTTGAACTTAGTGAGCTCATATCTTCAAGGTAGCTCGTCTTTGTCTCCATCCACAATTCGCGCTCTTGAAGATTGCCGATTCCTTGCTGAACAAAGTTTAGAATACTTATCAAACGCCTATGCCACGGCCAATCAAGCCAGCGATGTTCTTCCCACTTCTCAAGCTGAAGATTATGAAACAGTCCTCAGTGCCGTTTTGACTAACCAACAGACATGTTCGGATGGCCTACAAACTACAGCTTCTGATCAAAGACTGAAGAACGACCTGTCATCGTCACTCTCCAATGACAACAAGCTTCACAGTGTCACCCTGGCCTTGTTCCAAAAGGGATGGGTGCCCGAGAAGAAAATCATAAGATCATGGCAACAGAATGGGAAAAATTTGAATTTCAAAAATGGTCGTTTACCATTGAAGATGTCTAATAAAGCACGTGCTATTTATGATTCCGCTAGACGCCATGGGAGAAAACTACTTCAAACGGACGACGAAAGCGTTGTGGTGAGTGACATTGTGGTTGTTAGTCAGGATGGAAGCGGAAACTTCACCACCATCAATGATGCAATAGCTGCTGCACCAAATAACACAGATGCTAGTGATGGCTACTTCTTAATTCTAATCTCCGAAGGTGTGTATCAAGAGTATGTATCCATAGATAAAAAAAAGAAGTACTTGATGCTAATTGGAGAAGGAATCAATAGGACAATTATCACTGGCAATCACAATGTTGTCGATGGTTTTACAACATTCAACTCAGCAACATTTGCCGGTGATTTGGCTCCTAACGTGGGTACAGTGCAAACATACCTTGGGAGACCATGGAAAGAATATTCAAGGACAGTTGTGATGCAGTCCTTCATGGATAGTTTCATAAAACCTGCTGGTTGGAGTGAATGGAGTGGTGATTTTGCGTTGAGCACGTTGTACTATGCAGAATACGATAACAGGGGACCCGGTTCAAACACTGCTAATCGAGTGACGTGGACTGGTTATCATGTTATCAACGCCACTGATGCAGCCAATTTCACGGTGTCTAACTTCTTGAGCGGGGATGATTGGCTTCCTCAAACTGCTGTCCCATACTCAACTGGATTTATATAG 1338 0.4335 MAFKHSSVLTFSFYYMLSFMILASLCIADAGSSSMVPPETICSSTVDPAYCKTVLTNQNGSIFDFGRISFRKSMSLSRKFLNLVSSYLQGSSSLSPSTIRALEDCRFLAEQSLEYLSNAYATANQASDVLPTSQAEDYETVLSAVLTNQQTCSDGLQTTASDQRLKNDLSSSLSNDNKLHSVTLALFQKGWVPEKKIIRSWQQNGKNLNFKNGRLPLKMSNKARAIYDSARRHGRKLLQTDDESVVVSDIVVVSQDGSGNFTTINDAIAAAPNNTDASDGYFLILISEGVYQEYVSIDKKKKYLMLIGEGINRTIITGNHNVVDGFTTFNSATFAGDLAPNVGTVQTYLGRPWKEYSRTVVMQSFMDSFIKPAGWSEWSGDFALSTLYYAEYDNRGPGSNTANRVTWTGYHVINATDAANFTVSNFLSGDDWLPQTAVPYSTGFI* 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02124 445 Pfam Plant invertase/pectin methylesterase inhibitor 39 185 IPR006501 GO:0004857
Rops6g02124 445 NCBIfam pectinesterase inhibitor domain 11 188 IPR006501 GO:0004857
Rops6g02124 445 SMART PMEI_2 33 186 IPR006501 GO:0004857
Rops6g02124 445 Gene3D - 245 335 IPR012334 -
Rops6g02124 445 Gene3D Invertase/pectin methylesterase inhibitor family protein 39 189 IPR035513 -
Rops6g02124 445 FunFam Pectinesterase 39 189 - -
Rops6g02124 445 CDD PMEI-like_3 40 191 - -
Rops6g02124 445 PANTHER PECTINESTERASE 22 335 - -
Rops6g02124 445 Pfam Pectinesterase 337 430 IPR000070 GO:0030599|GO:0042545
Rops6g02124 445 Pfam Pectinesterase 251 335 IPR000070 GO:0030599|GO:0042545
Rops6g02124 445 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 40 189 IPR035513 -
Rops6g02124 445 SUPERFAMILY Pectin lyase-like 246 443 IPR011050 -
Rops6g02124 445 Gene3D - 336 445 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02124 Rops-Chr6 39556699 39558534 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02124 335 445 Carbohydrate Esterase AT4G02330 65.766 2.63e-46 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02124 K01051 - nnu:104599379 452.21