Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02123 ATGACTAAACCCGACTCAACCCACTTTGTCTCCAACCCGTGGTTTGTGATACACATAAAGGCTGGGGCATACTTCGAGAATGTGGAAGTGATCAGAAAGAAGACTAATTTGATGTTTGTTGGAGATGGGATTGGAAAGACGGTAGTGAAAGCCAGTAGGAATGTTGTGGATGGCTGGACCACTTTTCAATCAGCTACTGTTGCTGTGGTAGGAGACGGATTCATAGGGAAGGCAGCTGCTGCAGATTTAATCCCAGTCAAATCGCAATTCAAGAACTACCTAGGCCGTCCTTGGAAATTATACTCAAGAACGGTTTATCTGAAATCTGACATGGAGGATCTGATAGACCCAGCTGGGTGGTTGGAATGGAATGACACGTTTGCATTGGATACACTTTATTATGGGGAGTACATGAATATAGGTCCAGGTTCAAACACAAGTGCTAGAGTTAAGTGGCCAGGTTATAGGGTCATCAACAGCTCCACTGAGGCAAGCCAGTTCACAGTTGGACAGTTTATACAAGGCAATGACTGGTTGAAATCTACTGGGATTCCATTCTTCTCTAATTTGAGTTGA 576 0.441 MTKPDSTHFVSNPWFVIHIKAGAYFENVEVIRKKTNLMFVGDGIGKTVVKASRNVVDGWTTFQSATVAVVGDGFIGKAAAADLIPVKSQFKNYLGRPWKLYSRTVYLKSDMEDLIDPAGWLEWNDTFALDTLYYGEYMNIGPGSNTSARVKWPGYRVINSSTEASQFTVGQFIQGNDWLKSTGIPFFSNLS* 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02123 191 PANTHER PECTINESTERASE 14 77 - -
Rops6g02123 191 Pfam Pectinesterase 79 176 IPR000070 GO:0030599|GO:0042545
Rops6g02123 191 Pfam Pectinesterase 12 77 IPR000070 GO:0030599|GO:0042545
Rops6g02123 191 SUPERFAMILY Pectin lyase-like 12 188 IPR011050 -
Rops6g02123 191 Gene3D - 5 78 IPR012334 -
Rops6g02123 191 Gene3D - 79 190 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02123 Rops-Chr6 39540495 39552326 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02123 79 190 Carbohydrate Esterase AT4G02320 66.964 4.27e-50 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02123 K01051 - gmx:100802881 211.46