Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02116 ATGTGTGGTGGTGCTATCATTGCTGACTTCATTCCTCGCCGTGGAGGTCGCCGCCTCACCGCCTCTGAGATCTGGCCCAACTCATTCGGTAACAAGAATGACTTGGACTTCGAATATTCTCTCGTGGGTCATCGACAATCATCCACCCTCAAAAGAGCCCAACATCCCACAGTTGAGAAGCCGGTGAAAAAGCAGAGGAAAAACCTTTACAGAGGGATTCGGCAGCGTCCGTGGGGTAAATGGGCCGCTGAGATTCGTGATCCTAGAAAAGGGGTTCGTGTTTGGTTGGGTACCTTCAACACCGCGGAAGAAGCTGCCAGAGCCTATGATCGAGAGGCTCGAAAAATTCGTGGCAAGAAAGCCAAGGTGAATTTTCCCAATGAAGACGATGAATATTCCATTCAAGATCGTCGTAGTAAGCCACCCCCTGCACTCCGACCCCAAAACTCTCCCTTGTATCAACACCAATACAGTTGCCATCTGAATAATGCCCCTAAAAATGTTAACTTGGAGTTTGGTTATGATCTTAACCAAGCTGGGACATTTCCTTCCCATGTGGGTGCTATCAACACTGATTGGGTTATTGCATCTGGTGATGAAAATTCTGGACATGGGTCAGGGTTAGGTTCAGGTTCGGAGGGTGCTTACTCGACAACGGAGTTCATGGGCACCAATCAGAATGGGGACAACTATTTTCGTGGTGCGGTGATGGAGAATGAAAAAGAGGCAGAGCAAGAGCAAAAAGCAGAGGTGATTGAAGCTCAAGCGGCAAAGAGCGAAGTAGAGGAGCTATCTGAAGAGTTGATGGCATACGAGAATTACATGAAGTTTTATCAGATTCCGTACTATGATGGGCAATCGGTGGCACATAATAATGTTCAGGAAAGCGTGGTTGGGGATCTATGGAACTTTGATTAA 918 0.4749 MCGGAIIADFIPRRGGRRLTASEIWPNSFGNKNDLDFEYSLVGHRQSSTLKRAQHPTVEKPVKKQRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDREARKIRGKKAKVNFPNEDDEYSIQDRRSKPPPALRPQNSPLYQHQYSCHLNNAPKNVNLEFGYDLNQAGTFPSHVGAINTDWVIASGDENSGHGSGLGSGSEGAYSTTEFMGTNQNGDNYFRGAVMENEKEAEQEQKAEVIEAQAAKSEVEELSEELMAYENYMKFYQIPYYDGQSVAHNNVQESVVGDLWNFD* 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02116 305 PRINTS Ethylene responsive element binding protein signature 92 108 IPR001471 GO:0003700|GO:0006355
Rops6g02116 305 PRINTS Ethylene responsive element binding protein signature 70 81 IPR001471 GO:0003700|GO:0006355
Rops6g02116 305 ProSiteProfiles AP2/ERF domain profile. 69 126 IPR001471 GO:0003700|GO:0006355
Rops6g02116 305 SUPERFAMILY DNA-binding domain 69 127 IPR016177 GO:0003677
Rops6g02116 305 Gene3D AP2/ERF domain 69 127 IPR036955 GO:0003700|GO:0006355
Rops6g02116 305 SMART rav1_2 69 132 IPR001471 GO:0003700|GO:0006355
Rops6g02116 305 MobiDBLite consensus disorder prediction 121 151 - -
Rops6g02116 305 FunFam Ethylene-responsive transcription factor 2 68 127 - -
Rops6g02116 305 CDD AP2 70 127 IPR001471 GO:0003700|GO:0006355
Rops6g02116 305 Coils Coil 237 274 - -
Rops6g02116 305 PANTHER DNA-BINDING DOMAIN 52 267 IPR044808 GO:0003700|GO:0009873
Rops6g02116 305 MobiDBLite consensus disorder prediction 121 137 - -
Rops6g02116 305 Pfam AP2 domain 70 118 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02116 Rops-Chr6 39438291 39439709 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02116 1 127 AP2-EREBP Transcription Factor Family AT3G16770 55.862 2.16e-41 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Rops6g02116 AP2 9.1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02116 K09286 - gmx:100780763 437.958
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g02116 6 39438291 39439709 Rops6g02116 6 39438291 39439709 ECH