Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02106 ATGAAGGTGGTGAAGGTGGGTGGAGGTGGTAAATGTTTGGGAGGTGGAGATGAAGGTGGAGATGAAGGTGGAGGAGGGAGCTTCCCAAGTCCCAAACCCCAGCCAAAAGAAAATCTCATTTCTCACTCAAAAATGGGAAAATCAACTGCTAAGAAGAAATCCCCCTCCACCGCTGTGCACCCTCCGTACTTCGAGATGATTGCAGATGCGATATTCACGTTGAAAGAACGCGGTGGTTCGAGCCAGCCAGCAATAGCGAAGTTCATAGAGGACAAACACAACAAGGTGCTCCCTCCCAACTTCAGGAAACAACTCTCACTCCAATTGAAGAACTTGATCAAATCACAGAGGCTCTACAAGGTCAAAAACTCCTACAAAATTTCCTCCACCGACCACCAAACCACCACAGAAAACAAGGCCACTTCTTCGCCTAAGAACAAGGGTGGCAAGAAGGTTGCAGAAAAGAAGACCAAGAGGCTGAGTCAGGTGAACACACCCGAAACTCTCAAGAAAAAAGCCACAACCACCAACAACAACAACAACAAGAAGGATGTAACTAAGAAGAAACCCGTGGCAGGAGGGAAAGTGAAGCCTCTGAGTCAGGTGAAGACCCCTGAAGCAATGAAGAAGAAGCCCAACTTGATACCTATGAAGCGCAAGACTACTACTCCTCCCAAACCCATCAATTCTTCGAGGCCCAACAAGAAAGCTAGGAAATAA 720 0.4736 MKVVKVGGGGKCLGGGDEGGDEGGGGSFPSPKPQPKENLISHSKMGKSTAKKKSPSTAVHPPYFEMIADAIFTLKERGGSSQPAIAKFIEDKHNKVLPPNFRKQLSLQLKNLIKSQRLYKVKNSYKISSTDHQTTTENKATSSPKNKGGKKVAEKKTKRLSQVNTPETLKKKATTTNNNNNKKDVTKKKPVAGGKVKPLSQVKTPEAMKKKPNLIPMKRKTTTPPKPINSSRPNKKARK* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02106 239 MobiDBLite consensus disorder prediction 162 181 - -
Rops6g02106 239 MobiDBLite consensus disorder prediction 128 239 - -
Rops6g02106 239 MobiDBLite consensus disorder prediction 1 59 - -
Rops6g02106 239 Pfam linker histone H1 and H5 family 60 123 IPR005818 GO:0000786|GO:0003677|GO:0006334
Rops6g02106 239 SMART h15plus2 57 124 IPR005818 GO:0000786|GO:0003677|GO:0006334
Rops6g02106 239 MobiDBLite consensus disorder prediction 34 55 - -
Rops6g02106 239 PANTHER HISTONE H1 42 227 - -
Rops6g02106 239 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 59 129 IPR005818 GO:0000786|GO:0003677|GO:0006334
Rops6g02106 239 CDD H15 57 124 IPR005818 GO:0000786|GO:0003677|GO:0006334
Rops6g02106 239 PRINTS Histone H5 signature 73 90 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Rops6g02106 239 PRINTS Histone H5 signature 46 67 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Rops6g02106 239 PRINTS Histone H5 signature 217 236 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Rops6g02106 239 MobiDBLite consensus disorder prediction 128 145 - -
Rops6g02106 239 Gene3D - 52 162 IPR036388 -
Rops6g02106 239 SUPERFAMILY "Winged helix" DNA-binding domain 58 131 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02106 Rops-Chr6 39223489 39225436 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02106 66 127 Single Myb Histone (SMH) Gene Family AT1G49950 43.548 4.98e-09 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02106 K11275 - gmx:100306187 191.045
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g02106 6 39223489 39225436 Rops6g02106 6 39223489 39225436 ECH