Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02096 ATGGGAAGGGCTCCTTGTTGTGAGAAAGTGGGGTTGAAAAAGGGGAGGTGGACAGCTGAGGAAGATGAGATCTTAGCAAAATACATTCAGGCCAATGGGGAAGGTTCATGGAGGTCATTGCCCAAGAATGCAGGATTATTAAGGTGTGGAAAGAGTTGCAGGCTAAGATGGATTAACTATTTGAGAGCTGACCTTAAAAGAGGGAACATTTCTGCTGAAGAAGAAGATACCATGGTGAAGCTGCACGCTTCTTTTGGCAGCAGGTGGTCGTTGATAGCGAGTCACTTGCCAGGGAGAACAGACAATGAGATTAAAAACTACTGGAATTCTCACCTCAGCAGGAAAATTTACCGTTTCTCGAGGGTAGCAGGGGTCATGGAGGTTCCTCCACCCCAACGAAAAGGTGGTAAAACCAGCCGTTGGGCAATGAAGAAGAACAAAAGCTACACACAAACACCAAAACAAGTTATCACTCAACAGAATAGTGAAGCTGCAGTTCCGCCACCACCAACCCCGTCACTAGATAGCGAGGGTTTGTGTAACATGGTAGAGAAAGAAGCGTTAGTTGACAAGGTAAGAGAAGAGGAAATGGAAATGGAGGTAAAAATAACACATGAGAAGCGTGTCGAAGGTGAAAAGGAAACCGATGACGACATCTCGGGACTGTATGAAGTTGAAGGCATTAATGGCGGCAGTGGGGCGTTGTGTTTTAGTGACATGATGGACAGTTGCTTGCTGGAAACATGTCGGGTTTCGACGTTAACTGAAGAGAGAGAAGGCAATGACGTGGTGGGTGTTGGTGAGGAAAATGAAAGATCGAATGATGCGTGTCTCAGTAAAACGGGGGACCCGGAGAGTAGTGGGGGTATGAACCTCAGCTCCTCCAATGGGGAAAGTGGAGAATGGTGTTCTTCTATGCCTTTGGGTTTGGATGATGAGTGGGATTGGGAGAGCGTCATGGAGTATAATGATAGTAATATCAATGAGACTGATGCTTGGGAGCACAAAGAAAACGTGCTGACTTGGTTGTGGGACGATGATGATTGGGAAAGTGATACCAAGATTTTGGGAGAGATAGATCCTCAGAGACAAAACGATATGATTGCTTGGTTTCTCTCTTGA 1122 0.4599 MGRAPCCEKVGLKKGRWTAEEDEILAKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNISAEEEDTMVKLHASFGSRWSLIASHLPGRTDNEIKNYWNSHLSRKIYRFSRVAGVMEVPPPQRKGGKTSRWAMKKNKSYTQTPKQVITQQNSEAAVPPPPTPSLDSEGLCNMVEKEALVDKVREEEMEMEVKITHEKRVEGEKETDDDISGLYEVEGINGGSGALCFSDMMDSCLLETCRVSTLTEEREGNDVVGVGEENERSNDACLSKTGDPESSGGMNLSSSNGESGEWCSSMPLGLDDEWDWESVMEYNDSNINETDAWEHKENVLTWLWDDDDWESDTKILGEIDPQRQNDMIAWFLS* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02096 373 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Rops6g02096 373 Gene3D - 71 116 - -
Rops6g02096 373 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Rops6g02096 373 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Rops6g02096 373 CDD SANT 16 61 IPR001005 -
Rops6g02096 373 MobiDBLite consensus disorder prediction 257 278 - -
Rops6g02096 373 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Rops6g02096 373 SMART sant 66 114 IPR001005 -
Rops6g02096 373 SMART sant 13 63 IPR001005 -
Rops6g02096 373 Gene3D - 11 67 - -
Rops6g02096 373 FunFam Myb transcription factor 11 67 - -
Rops6g02096 373 MobiDBLite consensus disorder prediction 279 302 - -
Rops6g02096 373 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Rops6g02096 373 CDD SANT 71 112 IPR001005 -
Rops6g02096 373 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Rops6g02096 373 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 191 - -
Rops6g02096 373 MobiDBLite consensus disorder prediction 257 304 - -
Rops6g02096 373 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02096 Rops-Chr6 39073794 39077581 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02096 1 373 MYB Transcription Factor Family AT2G47460 41.809 8.91e-78 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops6g02096 Myb_DNA-binding 3.3e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02096 K09422 - gmx:100814275 418.313