Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02095 ATGGCTCATCGAAGAGCCAAGCTCTTGTTCCTTCTTTGCTCTCTCTGCTGCTATTCTCTCAACGCCATCGCCAAAAAGAGCTATTACGATGTTCTTCAAGTATCGAAGGGCGCATCGGAGGAACAGATAAAGAGAGCGTACAGGAAACTCGCTTTGAAGTACCATCCCGATAAGAACCAGGGAAACCAAGAAGCTAATAAGAGATTTGCTGAGATTAACAATGCGTATGAAGTACTTTCCGATAGCGAGAAGAGAAGCATTTATGATAGGTATGGGGAAGAGGGGTTGAAACAGCATGCTGCGGGTGGAGGCGGTGGTGGAATGGGAATGAATTTCCAAGATATTTTCAGCTCCTTCTTCGGTGGAGGTCCAATGGAGGAGGAAGAGAGAATTGTGAAAGGTGATGATGTGATTGTTGAACTGAATGCAACCCTGAAAGATTTGTACATGGGAGGTTCCTTGAAGGTTTGGAGGGAGAAAAATGTTTTAAAACCAGCACCTGGGAAGAGACGCTGTAACTGTAGAAATGAGGTTTATCACAGGCAAATAGGTCCTGGGATGTTTCAACAGATGACAGAGCAGGTCTGTGAGCAATGTCCAAATGTTAAATATGTAAGAGATGGTTATTTCATCACTGTTGATATTGAGAAAGGCATGCAAGACTGGCAGGAAGTGCTATTTTATGAGGATGGTGAGCCCATAATTGATGGAGAATCTGGAGATCTAAGGTTTCGCATCCGTACAGCACCCCATGACCTCTTCAGAAGGGAAGGCAATGACTTGCACGCCACTGTCACTATAACCCTGGTTCAAGCCCTTGTTGGCTTTGAGAAGACTATTAAACACCTAGATGAGCATCTGGTGGACATAGGCACAAAGGGAATCACAAATCCAAAGCAGGTGAGGAAGTTCAAAGGAGAGGGTATGCCACTCCATATGAGCACCAAGAAAGGAGATCTTTACGTCACATTTGAGGTTCTATTCCCCTCCTCAATAACGGAGGAGCAGAAAACAAATATAAAAGCAGTTCTTGATTAG 1038 0.4432 MAHRRAKLLFLLCSLCCYSLNAIAKKSYYDVLQVSKGASEEQIKRAYRKLALKYHPDKNQGNQEANKRFAEINNAYEVLSDSEKRSIYDRYGEEGLKQHAAGGGGGGMGMNFQDIFSSFFGGGPMEEEERIVKGDDVIVELNATLKDLYMGGSLKVWREKNVLKPAPGKRRCNCRNEVYHRQIGPGMFQQMTEQVCEQCPNVKYVRDGYFITVDIEKGMQDWQEVLFYEDGEPIIDGESGDLRFRIRTAPHDLFRREGNDLHATVTITLVQALVGFEKTIKHLDEHLVDIGTKGITNPKQVRKFKGEGMPLHMSTKKGDLYVTFEVLFPSSITEEQKTNIKAVLD* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02095 345 ProSitePatterns Nt-dnaJ domain signature. 69 88 IPR018253 -
Rops6g02095 345 Pfam DnaJ domain 28 89 IPR001623 -
Rops6g02095 345 SUPERFAMILY HSP40/DnaJ peptide-binding domain 254 338 IPR008971 GO:0006457|GO:0051082
Rops6g02095 345 FunFam DnaJ protein ERDJ3B 24 129 - -
Rops6g02095 345 Gene3D DnaJ domain 23 128 IPR036869 -
Rops6g02095 345 SMART dnaj_3 26 84 IPR001623 -
Rops6g02095 345 Pfam DnaJ C terminal domain 138 329 IPR002939 -
Rops6g02095 345 PRINTS DnaJ domain signature 29 47 IPR001623 -
Rops6g02095 345 PRINTS DnaJ domain signature 47 62 IPR001623 -
Rops6g02095 345 PRINTS DnaJ domain signature 64 84 IPR001623 -
Rops6g02095 345 PRINTS DnaJ domain signature 84 103 IPR001623 -
Rops6g02095 345 CDD DnaJ 28 81 IPR001623 -
Rops6g02095 345 SUPERFAMILY Chaperone J-domain 22 122 IPR036869 -
Rops6g02095 345 Gene3D - 129 250 - -
Rops6g02095 345 Gene3D - 251 329 - -
Rops6g02095 345 CDD DnaJ_C 201 332 - -
Rops6g02095 345 SUPERFAMILY HSP40/DnaJ peptide-binding domain 132 255 IPR008971 GO:0006457|GO:0051082
Rops6g02095 345 PANTHER DNAJ HOMOLOG SUBFAMILY B MEMBER 11 10 344 - -
Rops6g02095 345 ProSiteProfiles dnaJ domain profile. 27 92 IPR001623 -
Rops6g02095 345 FunFam DnaJ subfamily B member 11 250 345 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02095 Rops-Chr6 39056218 39061688 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02095 25 91 C2H2 Transcription Factor Family AT1G74250 43.056 4.14e-10 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02095 K09517 - gmx:100799701 604.364