Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02090 ATGTTGGAAACGAGTTATCCATCGCGAGTGTTTCGCGGTGTTCAATTCGTTCTATTTGGTTTCGATCCCCTTACCGAAAGCAAGATCCGATTCAAGCTTATAAATGGTGGTGGAGTTGATGTAGGGCAGTACAGTGGAAGTTGCACGCATGTTATTGTTGATAAGATTACATATGACGATCCTGTCTGTATTGCTGCCAGAAATGATCGGAAGACGCTGGTCACTGCGTTGTGGGTTGAACACAGTGCTGATATTGGAATGCCCGTTGATGCTACCTCGGTTATGTACAGACCGCTTAAGGATTTAAATGGAGTACCTGGTGCAAAAAATTTGATTGTGTGCTTGACTGGTTATCTACGCCAGGATCGGGATGACATTATGACAATGGTTGGCCTGATGGGTGCACAGTTTTCTAAACCATTGGTGGCAAACAAGGTTACTCATCTTATATGCTACAAATTTGAAGGAGAGAAGTACGAGCTTGCCAAGAGACTGGGCACAATAAAGCTAGTTAATCATCGTTGGTTGGAAGATTGCTTGAAGGATTGGGTGCTTCTTTCTGAAGACAAATATAAAAAGAGTGGTTATGAACTAGAGATGATGAGCGAAGAGGCAAAGGATTCTGAGGAAGAGGCTGAAGATTCCAAGCTGGGGCAATCAGGGGGAAGAAATAAAAGCAAAAGTCCCCTTAGTTCGAAATTTGGTATTGCTGCGACTCATGGATTGTCAAAATCAGCTAGAGAGGCATCAGATCCCGTCCCAGATTCTACTGGTCCACAGGTTTTGCCAAAAGTCATTAAGGGTAAAGACGCTTCACCTATTCCAGTAAATAAGAACAGATCTGATCAAGACTTAGGTTTGCATATTGTTGATGACCAGAAGAAAAGCTGTCAGGCTCCTGATGTTTCCTGGCAGTCTACATCATGTCAGCTTCCTGACACATATGTTAAGACCAGTGAGTATAAGAATGCTGATTTTCCAAAGGCACCTGGCTGCCAGGATCTTGGCCTTGCTGGAATTACAAATCCATCTGGTCAGCAACCTGATCTGCATGAGCACACTCCCGAGGCTAAGAAGTTGGTAAGTGACTTGAGATCAACATCTGCAAGTGCTGAAGGACTTGCGCATTCAGATGGAAAGCCTATTGCTACAAGTTATTCTAGGCAGAACCAAAAGGGATTTACTCTTCCGAGGATCTCAGATGAATGTGCAGGCAGAGAAGGCTACCACCGTGAAACCTCTTCCACCAAACTAGAAAAGGCATCTACCTGTGCTGAAGGTTCTGGGAATGGAAACAATTTTATTAAAGGGGATGAACTGATTAGTTTATTGCCTCAGAAGAGGATAAATGAAGCTGCTTCTACTAAGTTAAAATCAAGAAAGATGACCGCTGATGCAAAATTGTCTATTGAAAGAATCCCACAAGCAAATGGTAAATCTCAAGGATTAAAAATGACATCCGTGGATGATGAGCCACCCGAGTCTGATGGCTATTTTTCTGTCGGCAAAAATGGGACAAATAACTCAAACACTGGCTTAATTTCTAAATCAGCAGCTTCTACCTCCAACTCACTGGCATATGATGAGCCTATCTCAAGAAATGCAGGCTCGGAGTCTGCTCAGTGTGATAATGCCAATCAGAATTCAGTTCAATTGACTGTTCGGACCTTAAATGAGTCTAAAATTAATGGCGAGCCTCATATCACAGGTTTTGGGATGGGACAAGATGATAATGAAGCAGAGCAACTTAATGTCACTAAAAATCTCGAGTGTTGTTCATCACCAGGAAACAAGAAGTCACAGAATAAGGAATCCACTGGTCTTAATTTGGATTTAAGCAATGCAGAAAGTAATAGGCTGATTAGGAAATCACCCCGCAAGAAGTCGGTTGCCAAGAGAAGTTTGGGTTCTAGACCCAAAATAGGTGTCACTAATAAACTTAAAAGTTCAGTTTCCTTGAATAAAACTACACAGCAAGGTGAAGGGGCAAATTTTTCAAGTGGAAGCAAAGAGTCTTGTGATGCCAAGAAGCATCAGGCGTCCCCTCAAATCCTTGATGTTAATAAATTAATTGAACAAGAAACCGTTAGTAAATGTGCAGAAGATGCAGGTGGCAGAACTGAATTTTTGGATGACGAAACAGAGGCTCCTGATGACAATTGTGATTATGAGTTGGGAATGGTTCTTGATGCAGAATTGGTTCATCTTTCAAAAAAAGCAGACACAGCAACAGAAGAGAAGTCAGAAGCAATGCCTCCTAAGAAAGGCACAAATGAAGCTGATAAACAGAAGCGACCTTCACTGGCAGACTCAACTTCGAAGTTAAAAGTAAAGCATCAAGCAAGAAAACGTCCTGCAGGTAGAACCAAGAAGATTACAGTTGCGAAGGAATTATCGAAATCTGAGGAGGCAGTATCTAAGATTCCCAATGAGACGAGAGATGAGGCAGAGATGGAAATCCAGGAAGAAATGTCCCTACCTGCTGATATCAGTGGCAACTCAACTCTACCGAGAAATAAGTCCGAGAATTTTATTGAAGAGAAGGAAAATAGACCAATTGATGGGGAGCTTGATATAGTGGAGGGCAGAAGTGTTGGGAATCCAAATATTAAATCTAGTGTAAGGCCAGCAAAGATCAACTCTAGGAAAATAGGGCTCAATCCTTCTATATCAGAATCTAAAGCAAGAGTGAAAACTGATCCCACATGTTTTATATTAAGTGGGCATCGCCTACAGAGAAAGGAGTTTCAGCAATTAATCAAGCGTTTGAAAGGAAGGGTTTGCCGGGATTCTCATCAGTGGTCATATCAGGCGACACACTTCATAGCCCCAGACCCTATACGCAGGACAGAGAAATTTTTTGCAGCTGCGGCATCAGGAAGGTGGATTCTTAAAACCGATTTCTTAACTGCCAGTAGCCAGGCAGGAAAATTCTTGCAAGAGGAGCCTTATGAATGGCACCAGAATGGTCTCAGTGAGGATGGTGCAATCAATATGGAGGCTCCAAGAAAGTGGCGGCTGTTGAAAGAAAGAACAGGTCATGGAGCCTTCTATGGAATGCGCATTGTTGTATATGGCGACTGTATTGCCCCGCCTTTGGATACTCTGAAGCGTGTGATCAAAGCTGGAGATGGAACAATATTAGCAACGTCTCCTCCTTATACTCGCTTCCTTGGTACCGGGATCGACTATGCCGTAGTTAGCCCTGGTATGCCACGTGTTGATATGTGGGTCCAAGAGTTCTTAAAACATGAGGTACCTTGTATTGTAGCGGACTACTTGGTCGAGTACGTCTGCAAGCCAGGGTTCTCCCTTGAGAGACACGTGTTATATGGCACTCATGCTTGGGCAGAGAGGTCATTTGCAAAACTTCAAAGCAAGGCAGAAGAGATTATGGAGGAGCTCCTTACTCCTGAAGATTGCAATGACAAGGATATAGCTTGCCAAGTATGTGGATCCCGGGATAGAGGAGATGAAATGCTGATTTGTGGTGATGAAAGTGGTTCCGTTGGGTGTGGAATTGGTACCCATATCGATTGCTGCGATCCTCCACTCTCAGATGTTCCTGAGGAGGATTGGTTTTGCTCAAAATGCAGTAGCATCCGAGACTGCTCAAATAATCCCAGTAAAAGGAAAAAGGGTGTACTGTCTGTATCTAAGAGTAAGTGA 3669 0.4315 MLETSYPSRVFRGVQFVLFGFDPLTESKIRFKLINGGGVDVGQYSGSCTHVIVDKITYDDPVCIAARNDRKTLVTALWVEHSADIGMPVDATSVMYRPLKDLNGVPGAKNLIVCLTGYLRQDRDDIMTMVGLMGAQFSKPLVANKVTHLICYKFEGEKYELAKRLGTIKLVNHRWLEDCLKDWVLLSEDKYKKSGYELEMMSEEAKDSEEEAEDSKLGQSGGRNKSKSPLSSKFGIAATHGLSKSAREASDPVPDSTGPQVLPKVIKGKDASPIPVNKNRSDQDLGLHIVDDQKKSCQAPDVSWQSTSCQLPDTYVKTSEYKNADFPKAPGCQDLGLAGITNPSGQQPDLHEHTPEAKKLVSDLRSTSASAEGLAHSDGKPIATSYSRQNQKGFTLPRISDECAGREGYHRETSSTKLEKASTCAEGSGNGNNFIKGDELISLLPQKRINEAASTKLKSRKMTADAKLSIERIPQANGKSQGLKMTSVDDEPPESDGYFSVGKNGTNNSNTGLISKSAASTSNSLAYDEPISRNAGSESAQCDNANQNSVQLTVRTLNESKINGEPHITGFGMGQDDNEAEQLNVTKNLECCSSPGNKKSQNKESTGLNLDLSNAESNRLIRKSPRKKSVAKRSLGSRPKIGVTNKLKSSVSLNKTTQQGEGANFSSGSKESCDAKKHQASPQILDVNKLIEQETVSKCAEDAGGRTEFLDDETEAPDDNCDYELGMVLDAELVHLSKKADTATEEKSEAMPPKKGTNEADKQKRPSLADSTSKLKVKHQARKRPAGRTKKITVAKELSKSEEAVSKIPNETRDEAEMEIQEEMSLPADISGNSTLPRNKSENFIEEKENRPIDGELDIVEGRSVGNPNIKSSVRPAKINSRKIGLNPSISESKARVKTDPTCFILSGHRLQRKEFQQLIKRLKGRVCRDSHQWSYQATHFIAPDPIRRTEKFFAAAASGRWILKTDFLTASSQAGKFLQEEPYEWHQNGLSEDGAINMEAPRKWRLLKERTGHGAFYGMRIVVYGDCIAPPLDTLKRVIKAGDGTILATSPPYTRFLGTGIDYAVVSPGMPRVDMWVQEFLKHEVPCIVADYLVEYVCKPGFSLERHVLYGTHAWAERSFAKLQSKAEEIMEELLTPEDCNDKDIACQVCGSRDRGDEMLICGDESGSVGCGIGTHIDCCDPPLSDVPEEDWFCSKCSSIRDCSNNPSKRKKGVLSVSKSK* 1223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02090 1222 MobiDBLite consensus disorder prediction 739 776 - -
Rops6g02090 1222 ProSiteProfiles BRCT domain profile. 6 96 IPR001357 -
Rops6g02090 1222 SMART PHD_3 1147 1199 IPR001965 -
Rops6g02090 1222 MobiDBLite consensus disorder prediction 739 790 - -
Rops6g02090 1222 SUPERFAMILY FYVE/PHD zinc finger 1137 1204 IPR011011 -
Rops6g02090 1222 Gene3D BRCT domain 896 1012 IPR036420 -
Rops6g02090 1222 MobiDBLite consensus disorder prediction 500 523 - -
Rops6g02090 1222 Gene3D BRCT domain 1013 1110 IPR036420 -
Rops6g02090 1222 ProSiteProfiles BRCT domain profile. 904 986 IPR001357 -
Rops6g02090 1222 ProSiteProfiles BRCT domain profile. 109 193 IPR001357 -
Rops6g02090 1222 MobiDBLite consensus disorder prediction 591 619 - -
Rops6g02090 1222 ProSiteProfiles Zinc finger PHD-type profile. 1145 1201 IPR019787 -
Rops6g02090 1222 MobiDBLite consensus disorder prediction 454 523 - -
Rops6g02090 1222 Pfam twin BRCT domain 111 175 IPR001357 -
Rops6g02090 1222 PANTHER BRCA1 C TERMINUS DOMAIN CONTAINING PROTEIN, EXPRESSED 738 1213 IPR044254 -
Rops6g02090 1222 Pfam PHD-finger 1148 1199 IPR019787 -
Rops6g02090 1222 SUPERFAMILY BRCT domain 7 92 IPR036420 -
Rops6g02090 1222 MobiDBLite consensus disorder prediction 202 231 - -
Rops6g02090 1222 MobiDBLite consensus disorder prediction 406 431 - -
Rops6g02090 1222 Gene3D BRCT domain 99 224 IPR036420 -
Rops6g02090 1222 SMART BRCT_7 895 976 IPR001357 -
Rops6g02090 1222 SMART BRCT_7 8 86 IPR001357 -
Rops6g02090 1222 SMART BRCT_7 1014 1101 IPR001357 -
Rops6g02090 1222 SMART BRCT_7 105 183 IPR001357 -
Rops6g02090 1222 SUPERFAMILY BRCT domain 109 192 IPR036420 -
Rops6g02090 1222 SUPERFAMILY BRCT domain 901 989 IPR036420 -
Rops6g02090 1222 MobiDBLite consensus disorder prediction 643 670 - -
Rops6g02090 1222 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1111 1213 IPR013083 -
Rops6g02090 1222 CDD BRCT_TopBP1_rpt7 903 976 - -
Rops6g02090 1222 Gene3D BRCT domain 1 95 IPR036420 -
Rops6g02090 1222 MobiDBLite consensus disorder prediction 591 680 - -
Rops6g02090 1222 Pfam BRCA1 C Terminus (BRCT) domain 907 971 IPR001357 -
Rops6g02090 1222 MobiDBLite consensus disorder prediction 243 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02090 Rops-Chr6 39017380 39023801 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02090 129 244 Core DNA Replication Machinery Family AT4G02110 62.069 1.63e-36 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Rops6g02090 BRCT 4.8e-07 CL0459
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02090 K10728 - cave:132171163 1085.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g02090 6 39017380 39023801 Rops6g02090 6 39017380 39023801 ECH