Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02083 ATGGAGCTATCTGAGGTTGTGAGAAACATGGAAGAAGTTGTATTGCTGGTTGATGATTTGAAATCACTTTCGGGGATTTCTCGTTGTAGAATATGTCATGAAGAAGAATTTGAGAGCTCTAAAAGCTTGGAAGCTCCTTGTGCTTGTTCCGGCACGGTTAAGTTTGCTCATAGAGATTGCATTCAAACATGGTGCAACGAGAAAGGAAACACAACTTGTGAAATTTGTCTACAGCAATATGGACCTGGATATACAGCACCTCCAAAGAAATCTCAAATATCTGATGCAGCAATGACCATTAGAGAAAGCCTGCAAATTTCAATGAGAGAACAAGAACCGTTAAACACAAGAATAGTGGGCATAGTTGAAGGAGTGACAATAGAAAACAATTACTCTGAATGCACGTCTGCTGCAGATAGAAGCGCGTCTTGCTGTCGATCACTGGCTTTAGCTTTGACACTCATGTTGCTTGTAAGACATCTTTTTGAGGTGCTTACAAAGGGAATGGAAGATTATCCATTTACAATTCTTACGGTCTTTATGCTAAGGGCTATTGGAATTATTATACCCATGTACATAATTATCAGGACGATAGGAGCAGTTCAAAACAGTATTAAGCGCCAGTATTATCAGGATTCGGACGATGACTCATTAATGTCTGATGGGGATGATGAAGAAAATGAGACACCCAATGATACAATTTTAAGACTTTCATAG 717 0.3919 MELSEVVRNMEEVVLLVDDLKSLSGISRCRICHEEEFESSKSLEAPCACSGTVKFAHRDCIQTWCNEKGNTTCEICLQQYGPGYTAPPKKSQISDAAMTIRESLQISMREQEPLNTRIVGIVEGVTIENNYSECTSAADRSASCCRSLALALTLMLLVRHLFEVLTKGMEDYPFTILTVFMLRAIGIIIPMYIIIRTIGAVQNSIKRQYYQDSDDDSLMSDGDDEENETPNDTILRLS* 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02083 238 Pfam RING-variant domain 29 76 IPR011016 GO:0008270
Rops6g02083 238 SMART ringv_2 28 77 IPR011016 GO:0008270
Rops6g02083 238 FunFam E3 ubiquitin-protein ligase MARCH4 18 86 - -
Rops6g02083 238 SUPERFAMILY RING/U-box 28 80 - -
Rops6g02083 238 ProSiteProfiles Zinc finger RING-CH-type profile. 21 83 IPR011016 GO:0008270
Rops6g02083 238 MobiDBLite consensus disorder prediction 214 238 - -
Rops6g02083 238 Pfam Protein of unknown function (DUF3675) 82 198 IPR022143 -
Rops6g02083 238 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 85 IPR013083 -
Rops6g02083 238 CDD RING_CH-C4HC3_MARCH 29 76 - -
Rops6g02083 238 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 25 208 IPR033275 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02083 Rops-Chr6 38923976 38926303 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02083 29 76 C3H Transcription Factor Family AT2G37950 44.898 1.48e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02083 - - gmx:100797029 363.999
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g02083 6 38923976 38926303 Rops6g02083 6 38923976 38926303 ECH
Rops8g03736 8 77776170 77788309 Rops6g02083 6 38923976 38926303 PCT