Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02082 ATGAATCTTCGCTTATCAATGGCCTTGCATCCTTCATCTTACGTGATCCTCTTCCTGGCGTATGGTGCGCTGATAGTTCTCGCTTCATTGACACCATGCTGGTATGTCATGGTCACACATATTGAGAAACGTGTGAATTTGAGCTCAGAAAACACTCTGTCCAGATTAAAATCAGAAATTGAGTATTCAGCTGAATTGTTACAGCCTATGAAATCATCATCCACCAATTTAGCAAGATTTATGAGTTCAGCCCTTGATAATTCTACTAATATCTCTTTCTCAGATATTGAGACCAAGGTGGCTCCGTTATTATTTCAAGCATTTGAGACAGTTCCTTACTTAACTCAAATCTCATACATAGGGATGGAAGGTCTCTTTTTCTCATACTACAATGATCATGATCAAGCTTTAGCAATGTACTCTAACTCATCATGGGCTGCCTCAAATAAAACCTTATACTATATCCAACCTGTAAATCGTGAAAATGGAGAGGTTTATGGGGAAGCTATATCATCTAAACCCTCTATCAATGCAAGTTGGATTCATGAAGCATTTAATCTTTCACATGGAAATGCCTCATTGGGAACAAAGTGGAGCAATGATCAAGATCTTTTGTTCCTCAGTTCAGCTAGAATCACAAGAATGGGAGTGATCTCTTTAGGGTTTTCGGCAAAAGCAATAAAAGATTTTGTCACTCGCAGTGATCATCAAGGCACAAGCTCATATTTGGCTACCAAAGATGGAAAAGTCCTTGTACAAGGGATTCAAAATATCCGTTTGGTTATTTCTAATGATACGGTTTTCTTCCAATCAGTGAATGAAAATGGCAATACGATAAGTAATGAGGGCAATGTCTCATGCAAGGATGAAGCCGTTGCTTCTAGTTTGAATATTCGAGATACTGAATATTTAATTCACTGCTACCCTATTGATATAATGGGAATAGAATCGGTGCATGTTTTGGCTGTCCCACAAAAAGGATTTGTCAGCTTTGATCTAAACTATAAGAGAAAGGGAAGGACACTGTTCATTGTAATGATCATGATGATATGTATTGCTTTAGTCAGTTTTCTATTCCTAACTTATAGAGCAGCAAGGCGAGGAATGCATTTGTGTGCCTTACTCATCAAACAGATGGAAGCCACTGAACAAGCTGAACGAAAGAATAAGAACAAGAGCCACGCTTTTGCTAGTGCCAGCCATGATGTTCGTACTTCTCTTGCAGGCCTTACTGGTTTGATAGAAATGTCCTATGACTTAGTTGTCCCTGGTTCAGAATTGGAGACCAATTTAAAGCAAATGGAAGGTTGTACCCAAGACTTGCTAGGGCTGTTGAATTCTATACTTGACACAAGCAAAATTGAGGCTGGAAAAATGCAACTTGAGGAAGAGGTTTTTGATGTATCCCATCTCTTGGAAGATGTGGTTGATTTATACCATCCAGTGGCCATGAAGAAAGGTGTGGATCTTGTGTGGGACCCTTGTAATGGTTCTATTATCAGATATTCACGTGTGAAAGGTGACAGGGGAAAGCTTAAACAAGTTTTGTGCAATTTACTGAGCAATGCTGTTAAATTTACTGATGAAGGGCATGTAACAGTTCGGGCATGGGCTCAGAAGCCTACACTTCAGGACTCAATGATCACTACTAATGGATGTGGTTTCAAGAAACATTTGTCATGCTTATTTTATAAGAAAAACGAAGCACATGATGACCTAGAAGCCTTGAATTCAGTGCAACAAGATCCGTATTCTATGGATTTTATGTTTGAAGTGGATGATACAGGAAAAGGAATTCCCAAAGAGAATTATAAGTCTGTGTTTGAGAATTATGTTCAAGACAAAGAAACTGCTCTTGGCCAAGTAGGAACTGGCTTGGGACTTGGCATTGTGAAATCGTTGGTGCATTTGATGCATGGAGATATTAGAATTGTGGACAAGGATACTGGCAAAAAAGGAACATGCTTCAGGTTCAATGTGCTCCTCACTTTAAGTGAGAGTGATGGTAGCACAAGGGAAGGTTTTGAGTATGGATCAGGTGACAAGAACCAAGCTCAAGGGCCAACCATTCACGCTTCTAGTTCTGGTTCAAGCATTAGTCCCAGGTTACATATTTGCGGCTCTAGTTCTAAGCCTGAGGCTTCCCGTGTTGTTCTTTTGATTTTAGACAAGGAGCGTCGAAGGACTTCAAAAAGATTCATGGAGAGCTTAGGGATCAAAGTTAAGGTTGTGAAGTATTGGACACATCTGTATTATACTCTCGAGAAGATAAAACAGAAGGGTCTGCATTCTAGTGGACCAAGTTCTCCAATGTCTTCAGATTTGAGTTCTAGGTCTACATCTCATAATTCTTTTGCCAGAGCCACAGGAGTTCCTTTGAGTGCTATGGATGGAACTGAGTATATACATTCTTCAGTGTTCAAGAAGACAGATATTGGAGCTGCCCCAGGTTTCATCTTGATTATCATTGATGCAAATGCAGGACCTTTTTCTGAACTTTGTAGAATTGTATCTAACTTCAAGAAAGACCTTCCCAATCCATGTAGAGTTGTTTGGTTGGATAAGCCACTTATGCGTAGTACCAATTTCACAACAATTGATCAGAATGACATCGTCATATCCAAACCATTTCACGGTAGTCGTTTGTTCCAAGTCATAAAGCTTCTTCCTGAGTTTGGTGGTGCTTGGCAAATTAGTTCTGGTAAAGCTAAGAGAGAAAGTACTCATGATAGAGCTGGGAAGATTTGTAGTAGTAGAAGGGATTCAAGCTTATCAAAATACCAGTCCCTAACTGATGAAAGTGTTGAAAAAAGTTGGAAAGGAACTCAGAAATCCTATGTTAGGTCCAAGGCAAGAAAATCTTCAGTTCATCAAGGAGAAACCTCAAACTGTTACAAACCCTTAAGTGGTAAGAAGTTTTTGGTTGTTGAGGACTTAGAATTGTTACGCAAGCTGGCTCTGACTATTTTAAATTCCCTTGGTGCAACTATCGAGCAGTGTGAGAATGGGGAACAAGCTGTGAAGCTGGTTGCTGAGGGTCTAACCAGGGATTTTCCTTATCCTCCTTATGATTACATCTTGATGGATTGCCAGATGCCAGTAATGGATGGTTTTGAGGCAACACAGTTGATAAGAAAGATGGAGAAGTCGTATGGTGTTCGCATTCCTATCATTGCATTAACTGCTCACACTGACAAAGAGACAACAATGACTGGAATGGACTTTCACATGGTGAAGCCCATTAAGAAAGAGCCCTTACTTGAAGCCATCAGACACATACACAGACAGGATTTCATAATGTAA 3303 0.3981 MNLRLSMALHPSSYVILFLAYGALIVLASLTPCWYVMVTHIEKRVNLSSENTLSRLKSEIEYSAELLQPMKSSSTNLARFMSSALDNSTNISFSDIETKVAPLLFQAFETVPYLTQISYIGMEGLFFSYYNDHDQALAMYSNSSWAASNKTLYYIQPVNRENGEVYGEAISSKPSINASWIHEAFNLSHGNASLGTKWSNDQDLLFLSSARITRMGVISLGFSAKAIKDFVTRSDHQGTSSYLATKDGKVLVQGIQNIRLVISNDTVFFQSVNENGNTISNEGNVSCKDEAVASSLNIRDTEYLIHCYPIDIMGIESVHVLAVPQKGFVSFDLNYKRKGRTLFIVMIMMICIALVSFLFLTYRAARRGMHLCALLIKQMEATEQAERKNKNKSHAFASASHDVRTSLAGLTGLIEMSYDLVVPGSELETNLKQMEGCTQDLLGLLNSILDTSKIEAGKMQLEEEVFDVSHLLEDVVDLYHPVAMKKGVDLVWDPCNGSIIRYSRVKGDRGKLKQVLCNLLSNAVKFTDEGHVTVRAWAQKPTLQDSMITTNGCGFKKHLSCLFYKKNEAHDDLEALNSVQQDPYSMDFMFEVDDTGKGIPKENYKSVFENYVQDKETALGQVGTGLGLGIVKSLVHLMHGDIRIVDKDTGKKGTCFRFNVLLTLSESDGSTREGFEYGSGDKNQAQGPTIHASSSGSSISPRLHICGSSSKPEASRVVLLILDKERRRTSKRFMESLGIKVKVVKYWTHLYYTLEKIKQKGLHSSGPSSPMSSDLSSRSTSHNSFARATGVPLSAMDGTEYIHSSVFKKTDIGAAPGFILIIIDANAGPFSELCRIVSNFKKDLPNPCRVVWLDKPLMRSTNFTTIDQNDIVISKPFHGSRLFQVIKLLPEFGGAWQISSGKAKRESTHDRAGKICSSRRDSSLSKYQSLTDESVEKSWKGTQKSYVRSKARKSSVHQGETSNCYKPLSGKKFLVVEDLELLRKLALTILNSLGATIEQCENGEQAVKLVAEGLTRDFPYPPYDYILMDCQMPVMDGFEATQLIRKMEKSYGVRIPIIALTAHTDKETTMTGMDFHMVKPIKKEPLLEAIRHIHRQDFIM* 1101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02082 1100 SUPERFAMILY CheY-like 967 1095 IPR011006 -
Rops6g02082 1100 CDD HisKA 389 453 IPR003661 GO:0000155|GO:0007165
Rops6g02082 1100 SMART REC_2 971 1090 IPR001789 GO:0000160
Rops6g02082 1100 SMART HKATPase_4 507 664 IPR003594 -
Rops6g02082 1100 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 446 659 IPR036890 -
Rops6g02082 1100 MobiDBLite consensus disorder prediction 762 781 - -
Rops6g02082 1100 Gene3D - 948 1098 - -
Rops6g02082 1100 ProSiteProfiles Histidine kinase domain profile. 398 664 IPR005467 -
Rops6g02082 1100 Gene3D - 378 458 - -
Rops6g02082 1100 SMART HisKA_10 391 457 IPR003661 GO:0000155|GO:0007165
Rops6g02082 1100 MobiDBLite consensus disorder prediction 761 781 - -
Rops6g02082 1100 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 507 662 IPR003594 -
Rops6g02082 1100 PANTHER TWO-COMPONENT HISTIDINE KINASE 77 1091 - -
Rops6g02082 1100 PRINTS Bacterial sensor protein C-terminal signature 622 640 IPR004358 GO:0016310|GO:0016772
Rops6g02082 1100 PRINTS Bacterial sensor protein C-terminal signature 588 602 IPR004358 GO:0016310|GO:0016772
Rops6g02082 1100 ProSiteProfiles Response regulatory domain profile. 972 1094 IPR001789 GO:0000160
Rops6g02082 1100 MobiDBLite consensus disorder prediction 672 698 - -
Rops6g02082 1100 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 377 459 IPR036097 GO:0000155|GO:0007165
Rops6g02082 1100 Pfam His Kinase A (phospho-acceptor) domain 393 457 IPR003661 GO:0000155|GO:0007165
Rops6g02082 1100 MobiDBLite consensus disorder prediction 682 698 - -
Rops6g02082 1100 Gene3D - 459 668 IPR036890 -
Rops6g02082 1100 CDD REC_hyHK_CKI1_RcsC-like 973 1090 - -
Rops6g02082 1100 Pfam Response regulator receiver domain 974 1090 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02082 Rops-Chr6 38904854 38910382 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02082 15 1094 Histidine Kinase Gene Family AT2G47430 40.281 0.0 715
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Rops6g02082 HATPase_c 3.6e-25 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02082 - - cam:101504256 1387.09