Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02079 ATGGCTTCGATTCAACGTCCTGCGAGTTCGGGATCGGATGGTGGAGATCTGCATATGGACGAGAGGAAGAGGAAGAGGATGTTGTCGAACCGTGAATCAGCGAGGCGCTCGAGGATGAGGAAGCAGAAGCAGCTTGAAGATTTGACCGATGAAGTGATGCGATTGCAAACCGCGAACCAGCAACTGGCTCAGAGCATAAAGATGAAGGAGGAAGCGTTTGTTCAGATGGAAGCTGCAAACGACGTCCTCAAGGTTCAAACGACGGAACTTGCGGATCGATTGAGGTTTCTGAACTCGATCCTCGAGATTGCTGCTGAGGTCAGTGGACTCTCTGTTGAGATCCCTGAGATTCCTGACCCTCTCCTCAAACCATGGCATGTTCCTCATCCAATTCACCCTATTATGGCTTCCGCTGACATGTTCCTGCATTGA 432 0.5069 MASIQRPASSGSDGGDLHMDERKRKRMLSNRESARRSRMRKQKQLEDLTDEVMRLQTANQQLAQSIKMKEEAFVQMEAANDVLKVQTTELADRLRFLNSILEIAAEVSGLSVEIPEIPDPLLKPWHVPHPIHPIMASADMFLH* 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02079 143 SMART brlzneu 18 82 IPR004827 GO:0003700|GO:0006355
Rops6g02079 143 Pfam bZIP transcription factor 22 77 IPR004827 GO:0003700|GO:0006355
Rops6g02079 143 Gene3D - 20 75 - -
Rops6g02079 143 PANTHER BZIP TRANSCRIPTION FACTOR 44 7 139 - -
Rops6g02079 143 CDD bZIP_plant_GBF1 23 73 IPR045314 GO:0003700|GO:0006355
Rops6g02079 143 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 25 40 IPR004827 GO:0003700|GO:0006355
Rops6g02079 143 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 20 67 IPR004827 GO:0003700|GO:0006355
Rops6g02079 143 MobiDBLite consensus disorder prediction 1 44 - -
Rops6g02079 143 Coils Coil 31 65 - -
Rops6g02079 143 MobiDBLite consensus disorder prediction 15 44 - -
Rops6g02079 143 FunFam BZIP transcription factor 20 71 - -
Rops6g02079 143 SUPERFAMILY Leucine zipper domain 22 73 IPR046347 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02079 Rops-Chr6 38862371 38863488 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02079 1 141 bZIP Transcription Factor Family AT3G62420 51.389 2.31e-48 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Rops6g02079 bZIP_1 9e-11 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02079 K25786 - gmx:780550 212.231