Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02074 ATGGGGACTGATCGTTTTTCTTTCACACCTTTCAATTTCGACGGATTCCAGGGCGGTTATGGTTCTATACAAGAGGAGGTTGTGTTCCAAAGGGAACACAGTTTCTCTGCGATAATGGAGTTACTGGAAGGGATCAATCCTCTTTTTCCTACTATTGAAGAACATGGGGGGAATGAACCCCATTTCTTCAAAGAGCAAAACCAGCAGCAGCAACATGATTTCAATTCTGATAACTTGATGTTAGAAGATTTCAACTTTGAACCTGCTCTGGAACCAGCACATGCATTTCAAGAAACTTGGGGGCTAAAGAATCGAGGAGTGGCAACTCCACAACTTGTTGGATTCAATAAGCAAGTGCCATCATCTTCTTTAGCATCATTGGAGCATCTGAACAATTACGGAAGCAGGATCAAGAGGCTAAGGGGAAAGAACATAAGTAACACTGAAACTTGTCCAAGTCCTCAGAAGTTGTCAACGGAAGACATAGTAAGAGTGGCAGCAGCTAGGTATATCCAACACTCAACACAATGGTATGACAATCTTTGTATCCCTATGCACCCATATGGATCTGGTCTCGGGGGTTTCTCTGAGGAAGAAAATAGAGACATGGAACTTGCTCAGTTTCTTCTTGCAGTAGCTGAGAGGGTAGGTTGCCAACAATTTGAACGTGCAAGCATGTTACTTTTCCATTTCCATTGTAATTCACCAGCTGATGGTGGAAGCCCTGTTCAAAGAGTTATCTTTCATTTCGCTCAAGCACTCCTAGAAAGAATCAACAAAGAAACAAGAGGAAAGGTGACACTGAAAGGGTGTGAGAGAAACAAAGGAAGGGAATTGATTGAGAAGTTGGAATTGGATACTAACATGGCTATTACATGCCACCAAAAAATTCCTTTCAATCAAGTAATGCAATTCGCTGGTGTACAAGCTATAGTGGAACATGTTGCATCCCAAACCAAAATCCACCTGATAGATCTTGATATTGGATGTGGGGTGATGTGCATAGGTTTGATGCAAGCACTGGCAGAGCGCAAGGAAAGGCCAATTGAGCTTCTGAAGATCACTGCCATTGGAAATGTAGGCAATACCAAGCTAGAAGAGACCGGCAAAAGGTTAATGAGTTTTGCTGAATCCTTGAACTTACCCTTTTTATATAAAACAGTTTTTGTTACATACATTATAGAGATCAAGGTAGATCACTTTGAAATTGAAGATGATGAAGCTGTGGCTATATACTCTCCATATTTACTGAGGACTATGGTATCAGATTTTGACTGCTTGGAGAACTTGATGAAGGTGATAAGAAAAATCAAACCATGTATAATGATAGTCCTTGAATTGGAAGCAAACCATAATTCACCCTCCTTTGTGAATCGCTTTGTGGAAGCATTGTTCTTCTACTCGGCATATTTTGACTGCATTGAGACCTGTTTAAAACAGGACTATGAGTGTAGAATGAGACTAGAAGCAATATTATCTGAAGGGATACGAAACATTGTTGCTATGGAAGATAGAGAAAGGACAGTTAGGAATGTCAAGATAGATGTTTGGAGAAGGTTCTTCGCAAGGCACAGAATGGTGGAAACTAGATTTAGCGAGTCATCTATGTACCAAGCTAACATGGTTGCCAAAAAGTTTGCTTGTGGGAATTTCTGTACTATAGACGAAAACGGGAAGTGTCTAATAGTTGGGTGGAAAGGGACCCCAATTCATTCAATCTCAGCTTGGAAATTTCTTTGA 1740 0.4063 MGTDRFSFTPFNFDGFQGGYGSIQEEVVFQREHSFSAIMELLEGINPLFPTIEEHGGNEPHFFKEQNQQQQHDFNSDNLMLEDFNFEPALEPAHAFQETWGLKNRGVATPQLVGFNKQVPSSSLASLEHLNNYGSRIKRLRGKNISNTETCPSPQKLSTEDIVRVAAARYIQHSTQWYDNLCIPMHPYGSGLGGFSEEENRDMELAQFLLAVAERVGCQQFERASMLLFHFHCNSPADGGSPVQRVIFHFAQALLERINKETRGKVTLKGCERNKGRELIEKLELDTNMAITCHQKIPFNQVMQFAGVQAIVEHVASQTKIHLIDLDIGCGVMCIGLMQALAERKERPIELLKITAIGNVGNTKLEETGKRLMSFAESLNLPFLYKTVFVTYIIEIKVDHFEIEDDEAVAIYSPYLLRTMVSDFDCLENLMKVIRKIKPCIMIVLELEANHNSPSFVNRFVEALFFYSAYFDCIETCLKQDYECRMRLEAILSEGIRNIVAMEDRERTVRNVKIDVWRRFFARHRMVETRFSESSMYQANMVAKKFACGNFCTIDENGKCLIVGWKGTPIHSISAWKFL* 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02074 579 ProSiteProfiles GRAS family profile. 196 577 IPR005202 -
Rops6g02074 579 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 156 567 IPR005202 -
Rops6g02074 579 Pfam GRAS domain family 206 577 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02074 Rops-Chr6 38820606 38822345 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02074 203 578 GRAS Transcription Factor Family AT1G66350 28.647 5.29e-45 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Rops6g02074 GRAS 1.1e-76 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02074 - - gmx:100791952 706.827
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g02074 6 38820606 38822345 Rops6g02074 6 38820606 38822345 ECH
Rops8g03749 8 77927087 77927962 Rops6g02074 6 38820606 38822345 PCT