Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02056 ATGGTTCGTAAGGCTGAGAGTGTGGACAGGGCTGAGATGGTTGGTATGGCTGAGAGTGTGGATAGGGCTGAGATGGTTTGTAGGGCTGAGATGGAGGATACAGCTGAGATGTTTGGTAGGACTGAGATGGAGGATATGGCTGAGATGGTGGGTAGGGCTGAGGATATGCAGGCTGATTATGACAAGTGGATGTCTTGGAACGTTAAAGCTTACCAGAAAAAGAACATTCTGAAAACCAAATGGAAGGTGGCTGCACCTGGGCAGGCTCTAGATTTGAAGCTGAGGCAGGCTGATAGTCACAAAGTTAGGATAACAGTTAGCCCAGATGGTGATGGTGACTTCAAGACCATTACAGAAGCTCTTAATAGCATTCCACCACGCAACACTAGGAGAGTCGTAGTGATGATTGCACCAGGTGTTTATAGGGAGAAAGTCATGATCCCAAGAACATTGCCTTTCATTACATTCTTAGGGGACGCCATGGATCCACCAACCATTACTGGAAATGATACAGCGTCTGTCATTGGAAAAGATGGGACTTCGTTAGGGACGTTCCAGAGTGCAACTGTTGCTGTGGATGCTAGCTATTTTATGGCCATCAACATTAAATTTGAGAACAGTGCTCCGCATGTCATTGGAACAAAGGGTGAACAAGCTGTAGCGCTTCGCATCTCAGGAACCAAGGCTGCTTTCTACAATTGCACTTTCTATGGGGCTCAAGACACACTTTATGATCACAAAGGCCTTCACTACTTCAACAATTGCTCTATTCAAGGCTCCGTTGATTTCATCTTCGGCTCTGGGAGGTTGAATGTTAGTTCATCTACTGTTACTGAATCTGGTGGGGTACGTATAAGAGACATTGTCTCTGAATATAGTAGTGATGATTCAGAACATGAAGAGGTTGTTGATTTGGACAATGAACCGACAAATGTCACTCTGGATTCTGACTTTGTGGCTCCTCATCGTCAATTCTCAGAAATAAATTTGGCTGCACTGAGGAGTGGAAATAGAAATGTTGAAGTAGATAATGATGGAATATGGACGCCAATCATCAAAACCTTCAAGGTTGACACTTCTGATACACATAGGTTGATTGTTAAATGTCCAAGATATGGTAATGGTTGCAACTGGAGGAATTGCTACCTAAATTCCATAACCAAGAAGGTGGCATCCATAACTGCTCAAAAGCGTACAAATTCATCACTGGATAGTGGATTTTCTTTCAAAAACAGCATAGTAACAGGTAGTGGTCAGGTTTATCTTGGAAGAGCATGGGGAGATTATTCCAGAGTTGTTTTCTCTTACACCTACATGGACAAGATAGTTCACCCAAAAGGATGGAGTGATTGGGGTGACCAAAAACGAGACATAAGGGTATATTATGGAGAATACAAGTGCAGTGGGCCAGGAGCTAACTTGAGTGGAAGAGTGCCATGGGCAAGAGTTCTTACGGACGAAGAGGCCAGGCCTTTTATTGGGATTCACTTCATTGAAGGGGAAACTTGGCTCATTAGCCCGTAA 1524 0.439 MVRKAESVDRAEMVGMAESVDRAEMVCRAEMEDTAEMFGRTEMEDMAEMVGRAEDMQADYDKWMSWNVKAYQKKNILKTKWKVAAPGQALDLKLRQADSHKVRITVSPDGDGDFKTITEALNSIPPRNTRRVVVMIAPGVYREKVMIPRTLPFITFLGDAMDPPTITGNDTASVIGKDGTSLGTFQSATVAVDASYFMAINIKFENSAPHVIGTKGEQAVALRISGTKAAFYNCTFYGAQDTLYDHKGLHYFNNCSIQGSVDFIFGSGRLNVSSSTVTESGGVRIRDIVSEYSSDDSEHEEVVDLDNEPTNVTLDSDFVAPHRQFSEINLAALRSGNRNVEVDNDGIWTPIIKTFKVDTSDTHRLIVKCPRYGNGCNWRNCYLNSITKKVASITAQKRTNSSLDSGFSFKNSIVTGSGQVYLGRAWGDYSRVVFSYTYMDKIVHPKGWSDWGDQKRDIRVYYGEYKCSGPGANLSGRVPWARVLTDEEARPFIGIHFIEGETWLISP* 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02056 507 Gene3D - 372 506 IPR012334 -
Rops6g02056 507 ProSitePatterns Pectinesterase signature 2. 257 266 IPR033131 -
Rops6g02056 507 SUPERFAMILY Pectin lyase-like 103 504 IPR011050 -
Rops6g02056 507 Gene3D - 45 282 IPR012334 -
Rops6g02056 507 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 95 504 - -
Rops6g02056 507 Pfam Pectinesterase 104 271 IPR000070 GO:0030599|GO:0042545
Rops6g02056 507 Pfam Pectinesterase 386 500 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02056 Rops-Chr6 38563693 38579775 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02056 372 504 Carbohydrate Esterase AT5G47500 42.222 2.07e-29 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02056 K01051 - pop:7455411 323.168
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g02056 6 38563693 38579775 Rops6g02056 6 38563693 38579775 ECH