Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02055 ATGGAGATGGAGTACACGAACGGTGTTCACGTGATGAGAAGCTTATCAGATTGTGGCTCATCAGCAACATATCGAAGTGGAGAAGAAATGGTAATAAGGAAAGGTCCATGGACAGAGGACGAGGATTCTGTTCTAATCAACTACGTCAGCGTCCACGGTGAAGGTAATTGGAACTCCGTTGCTCGCTATTCAGGTCTAAAGCGAACAGGCAAAAGCTGCAGACTAAGATGGTTGAACTACTTGCGTCCAAATGTTCGACATGGGAACATCACCCTCCAAGAACAGCTCTTGATTCTTGATCTCCATTCCCGCTGGGGAAATCGGTGGTCTAAAATAGCAGAACAGTTGCCTGGGAGAACAGACAATGAGATAAAGAACTATTGGAGAACCAGGGTGGTGAAGTTGGCTAGGCAACTCAAATGTGATGTCAACAGCAAACAGTTCAGGGACGCCTTGCGTTTTGAATGGATGCCACGGTTGATGGAGAGGATCCAAGCCTCTGGTCAAACCACCTTCTGCAACACTCAACAAACCCACAGTGAACCTTGTGGGGCCAATCCTCCCATGTTGTCAGAGGCTTCATCGTACTCATCAGTGGTTAATGTCCAACCTCAACCCCTTTCAGAATCAAGTGTATCATACAATTTAATGGGTGGTAGTAACTGGTCATCAGATACTACAGAAATGGGATCCACGTCCACCCAGTGGAACTATTCAGACATCCAAGCATTTGAACCAGGCAATGGGTTTGGTGGTGCTGACTTGTGGACTGATGAAAACATATGGTTCTTGCAGCAGCAGCTTGCTGATGATTTATGGTCCAGTTTTTAA 831 0.4621 MEMEYTNGVHVMRSLSDCGSSATYRSGEEMVIRKGPWTEDEDSVLINYVSVHGEGNWNSVARYSGLKRTGKSCRLRWLNYLRPNVRHGNITLQEQLLILDLHSRWGNRWSKIAEQLPGRTDNEIKNYWRTRVVKLARQLKCDVNSKQFRDALRFEWMPRLMERIQASGQTTFCNTQQTHSEPCGANPPMLSEASSYSSVVNVQPQPLSESSVSYNLMGGSNWSSDTTEMGSTSTQWNYSDIQAFEPGNGFGGADLWTDENIWFLQQQLADDLWSSF* 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02055 276 CDD SANT 91 130 IPR001005 -
Rops6g02055 276 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 31 212 IPR044676 GO:0003700|GO:0006355|GO:0043565
Rops6g02055 276 CDD SANT 36 81 IPR001005 -
Rops6g02055 276 Gene3D - 34 86 - -
Rops6g02055 276 Gene3D - 91 132 - -
Rops6g02055 276 ProSiteProfiles Myb-like domain profile. 82 132 IPR001005 -
Rops6g02055 276 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 29 85 IPR017930 -
Rops6g02055 276 SMART sant 33 83 IPR001005 -
Rops6g02055 276 SMART sant 86 134 IPR001005 -
Rops6g02055 276 ProSiteProfiles Myb-like domain profile. 29 81 IPR001005 -
Rops6g02055 276 SUPERFAMILY Homeodomain-like 32 128 IPR009057 -
Rops6g02055 276 FunFam MYB transcription factor 91 154 - -
Rops6g02055 276 Pfam Myb-like DNA-binding domain 34 81 IPR001005 -
Rops6g02055 276 Pfam Myb-like DNA-binding domain 88 130 IPR001005 -
Rops6g02055 276 FunFam Myb transcription factor 34 86 - -
Rops6g02055 276 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 86 136 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02055 Rops-Chr6 38555335 38556366 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02055 28 271 MYB Transcription Factor Family AT2G47190 49.801 4.95e-79 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops6g02055 Myb_DNA-binding 5e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02055 K09422 - gmx:778040 367.081