Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02054 ATGGATGTTAAGGTTATAAAAGGTGGGTTTGATGAAAACGAGATGGGCTTAAGAAAAGGTCCATGGACGTTAGACGAGGACACTATACTCGTTAATTACATTACCAGTCACGGTGAAGGTCACTGGAATTCCTTGGCACGTTGTGCAGGTCTGAGGAGAAGTGGGAAAAGTTGCAGATTAAGGTGGCTAAACTACTTGCGTCCAGATGTGCGGCGTGGAAATATCACACTGCAAGAACAGATATTGATTCTTGACCTCCATTCACGTTGGGGAAATAGGTGGTCGAAGATTGCTCAGCACCTTCCAGGAAGAACAGACAATGAAATAAAGAACTATTGGAGGACCAGAGTGATAAAGCAAGCGAAGCAGCTCAAGTGCGATGTGGACAGCAAACAGTTCAGAGACGCCTTGCGTTACGTGTGGATGCCTCGTTTGCTGGAGCGGGTTCAGCCCGCATCCCAATCTCTCGAGCCTCAGAAACAATTGGACCCAAGCCCAACTGCATCTGGGCTCCTTCTTAACCAGAACGGGTTGCAAAGTGCATATTCAGGAACAGGGTGGGCAAAACCAAACCACTCCTCTTGTGCCAGTGGTACTTCCTCGGACTCATCATCAGTTGAGTTCCAAGTTCCTTCAAATCCCCACCATTCGGAACTGTTGGGTCATGATCTATGGCCAAGTTTCAACAACCAGATGTCAGAACAGGGGAATGGTGGTGGTGACTCTTTAGAGAGTTTGTGGAATGATGAGAGTATATGGTTTTTGCAACAACTTTCTGATGACCCCGAAATAAAGTACAATTTCCTTGCGTGA 813 0.4674 MDVKVIKGGFDENEMGLRKGPWTLDEDTILVNYITSHGEGHWNSLARCAGLRRSGKSCRLRWLNYLRPDVRRGNITLQEQILILDLHSRWGNRWSKIAQHLPGRTDNEIKNYWRTRVIKQAKQLKCDVDSKQFRDALRYVWMPRLLERVQPASQSLEPQKQLDPSPTASGLLLNQNGLQSAYSGTGWAKPNHSSCASGTSSDSSSVEFQVPSNPHHSELLGHDLWPSFNNQMSEQGNGGGDSLESLWNDESIWFLQQLSDDPEIKYNFLA* 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02054 270 FunFam Myb transcription factor 19 71 - -
Rops6g02054 270 Pfam Myb-like DNA-binding domain 72 115 IPR001005 -
Rops6g02054 270 Pfam Myb-like DNA-binding domain 19 66 IPR001005 -
Rops6g02054 270 SUPERFAMILY Homeodomain-like 16 113 IPR009057 -
Rops6g02054 270 Gene3D - 19 71 - -
Rops6g02054 270 MobiDBLite consensus disorder prediction 189 212 - -
Rops6g02054 270 MobiDBLite consensus disorder prediction 224 242 - -
Rops6g02054 270 MobiDBLite consensus disorder prediction 189 242 - -
Rops6g02054 270 Gene3D - 76 117 - -
Rops6g02054 270 FunFam MYB transcription factor 76 139 - -
Rops6g02054 270 CDD SANT 76 115 IPR001005 -
Rops6g02054 270 ProSiteProfiles Myb-like domain profile. 14 66 IPR001005 -
Rops6g02054 270 SMART sant 18 68 IPR001005 -
Rops6g02054 270 SMART sant 71 119 IPR001005 -
Rops6g02054 270 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 14 66 IPR017930 -
Rops6g02054 270 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 121 IPR017930 -
Rops6g02054 270 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 14 203 IPR044676 GO:0003700|GO:0006355|GO:0043565
Rops6g02054 270 CDD SANT 21 66 IPR001005 -
Rops6g02054 270 ProSiteProfiles Myb-like domain profile. 67 117 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02054 Rops-Chr6 38523736 38525461 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02054 12 256 MYB Transcription Factor Family AT2G47190 50.000 3.17e-77 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Rops6g02054 Myb_DNA-binding 1.3e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02054 K09422 - gmx:778065 340.117