Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02047 ATGTGGGTCATGGAAGAGAGACAGGGAAGTGAAGTGGATCCATCCCACAGTTTTCACTCGTCCAGGATCGATTTTGGTGCTAAAATCGCTGTTGAATATATAGTTTGCTCTTTAGAGTTCTGTTTTCATCTGGACAAGGGTCTGTGTGACCTAACCTATTCTCTGAGGTTGCCTGATGAGATGAATGGCATGAATATTAGGGATGACAGGGAAATGGAAGCAACCGTGGTAGATGGAAATGGGACTGAAACAGGACATGTAATTGTCACTACCATTGGTGGTAAAAACGGCCAGCCAAAGCAGACAATAAGCTACATGGCTGAGCGTGTTGTTGGACATGGATCGTTTGGTGTAGTTTTCCAGGCAAAGTGCTTGGAGACAGGTGAAACCGTGGCTATAAAGAAGGTTCTTCAAGACAAGAGGTACAAGAACCGGGAATTGCAAACCATGCGCCTTCTGGACCACCCCAATGTAGTAGCTTTGAAGCATTGTTTCTTTTCAACAACGGAAAAAGATGAGCTTTATCTTAACTTGGTACTTGAGTATGTTCCTGAGACTGTCCATAGAGTGATCAGACACTACAACAAAATGAATCAAAGGATGCCATTGATATATGTTAAACTTTATTTTTACCAGATATGTAGAGCACTAGCTTATATTCACAACTGTATTGGAGTGACTCACAGGGACATAAAACCTCAAAATTTACTGGTCAATCCTCACACCCACCAGCTGAAGATTTGTGACTTTGGGAGCGCAAAAGTCTTGGTCAAGGGCGAACCAAACATATCTTACATATGTTCTAGGTACTATAGAGCACCTGAGCTTATCTTTGGTGCAACTGAGTACACTGCAGCCATTGACATTTGGTCAGCTGGTTGTGTACTTGGAGAACTATTGCTTGGCCAGCCTCTCTTTCCTGGTGAGAGTGGAGTAGATCAGCTTGTTGAAATTATCAAGGTTTTAGGTACCCCAACAAGGGAAGAAATAAAGTGCATGAATCCTAATTACACTGAGTTCAAATTCCCACAAATCAAAGCTCATCCATGGCACAAGATCTTTCACAAACGTATGCCACCTGAAGCTGTGGATCTCGTCTCAAGACTACTGCAATACTCTCCAAATCTTCGATGCACAGCTCTGGAGGCCCTGGTGCATCCATTCTTTGATGAACTGCGTGATCCAAATACCCGCTTACCAAATGGGCGTTTCCTTCCTCCACTATTTAATTTCAAAGCCAATGAGCTTAGGGGAGTGCCCGCTGAAATGCTGGTGAAACTGATTCCATCTCATGCAAGAAAGCAGTGTGCCTTGTTTGGGTCATAG 1326 0.4344 MWVMEERQGSEVDPSHSFHSSRIDFGAKIAVEYIVCSLEFCFHLDKGLCDLTYSLRLPDEMNGMNIRDDREMEATVVDGNGTETGHVIVTTIGGKNGQPKQTISYMAERVVGHGSFGVVFQAKCLETGETVAIKKVLQDKRYKNRELQTMRLLDHPNVVALKHCFFSTTEKDELYLNLVLEYVPETVHRVIRHYNKMNQRMPLIYVKLYFYQICRALAYIHNCIGVTHRDIKPQNLLVNPHTHQLKICDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTAAIDIWSAGCVLGELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIFHKRMPPEAVDLVSRLLQYSPNLRCTALEALVHPFFDELRDPNTRLPNGRFLPPLFNFKANELRGVPAEMLVKLIPSHARKQCALFGS* 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02047 441 Gene3D Phosphorylase Kinase; domain 1 89 184 - -
Rops6g02047 441 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 69 435 - -
Rops6g02047 441 CDD STKc_GSK3 100 392 IPR039192 -
Rops6g02047 441 FunFam Glycogen synthase kinase-3 beta 89 184 - -
Rops6g02047 441 ProSitePatterns Protein kinases ATP-binding region signature. 111 135 IPR017441 GO:0005524
Rops6g02047 441 ProSitePatterns Serine/Threonine protein kinases active-site signature. 226 238 IPR008271 GO:0004672|GO:0006468
Rops6g02047 441 ProSiteProfiles Protein kinase domain profile. 105 389 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g02047 441 Pfam Protein kinase domain 105 389 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g02047 441 Gene3D Transferase(Phosphotransferase) domain 1 185 433 - -
Rops6g02047 441 SUPERFAMILY Protein kinase-like (PK-like) 104 414 IPR011009 -
Rops6g02047 441 FunFam Shaggy-related protein kinase kappa 185 433 - -
Rops6g02047 441 SMART serkin_6 105 389 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02047 Rops-Chr6 38416368 38424728 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02047 111 396 MAP Kinase Gene Family AT3G45640 35.593 6.94e-57 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Rops6g02047 Pkinase 4.9e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02047 K00924 - gmx:100788046 774.622