Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02038 ATGGAAGCTAGATTTGACGCAGAAGCTTATCATTTTTATGGTGTGGGTGCTTCCTCAGATTTGAGGAGTGTGGGGAAAAGGTCCTTGGAATGGGATTCGAATGATTGGAGATGGGATGGTGATCTGTTCATAGCCAGTAGGGTGAATCAAGTGCCAGCTAATGGTGTGGGAGTGGTGGGACAAGAATTTTTCCCTCTTGGGTCCGGGATCCCGGCCTCAAACAGCTCATCTTCCTGCTCTGAGGAAGTAGATCTTAGGAACCCCAAGGGGAACAAGGAAGGGGAGAAGAAAAGGAGAGTTGTTGTGCTGGAGGATGATGGTTTGAACGAGGAAGCAGGTACTCTTAGCTTAAAGCTTGGTGGGCATGCTTCTCCTATGGTGGATAGGGAGATTTCTAGCTGGGATGGGATGAATGGGAAAAAAAGTAGAGTAGCTGCTGGTACTTCGAATCGAGCTGTTTGTCAGGTGGAGGACTGTGGTGCAGATCTGAGCAGGGCTAAGGATTATCACAGACGTCATAAGGTTTGTGAGATGCACTCCAAGGCCAGTACAGCGCTTGTGGGAAATGCAATGCAGAGGTTCTGTCAACAATGTAGTAGGTTTCACTTGCTTCAAGAATTCGATGAAGGAAAGAGAAGCTGTCGAAGACGCTTGGCAGGCCATAATAAACGAAGAAGGAAAACAAATCATGAAGCTGTTCCTAATGGAAGTTCACTAAATGATGATCAAACTAGTAGTTATCTGTTGATAAGTTTATTGAAGATACTCTCAAACATGCATTCTGACAGATCGGATCAGACTACAGATCAGGATCTATTAACTCATCTTCTAAGGAGTCTTGCTAGTCAGAATGGTGAACAAGGGGGCAAGAACTTGTCTAACCTTTTGCGGGAACCAGAGAATTTGTTGAGAGAAGGGGGTTCATCTAGGAGGCCAGAGATGGTGTCAGCTTTATACTCCAATGGTTCTCAAGGCTCTCTAACTGTTATGAGACAACATCAAACTGTGTCTATGACTAAAGTGCAACAAGAAGTGATGCATGCACATGATGCTGGGGCTGCTGATCAGCAACTCATGTCTTCTATAAAGCCCGGCATTTCAAACAGTCCTCCGGCTTACTCAGAAGCCAGAGACAGTACTGCTGGACAAATCAAGATGAATAACTTTGATTTGAATGACATATATATTGACTCAGATGATGGCATGGAAGATCTAGAAAGATTGCCTGTCTCTACAAATCTTGTCACTAACTCTCTTGATTACCCATGGACACAACAGGATTCTCATCAGTCAAGTCCACCTCAGACAAGTCGAAATTCAGATTCTGCATCTGCCCACTCCCCTTCTAGTTCCAGTGGAGAAGCTCAGAGTCGCACAGACCGAATTGTTTTTAAACTCTTCGGTAAAGAGCCAAATGATTTTCCTCTTATACTTAGAGCACAGATTCTTGACTGGTTATCCCACAGTCCTACTGATATTGAAAGCTACATACGGCCTGGTTGTATTGTTTTGACCATTTATCTGCGTCAGGCTGAAGCTGTGTGGGAGGAACTTTGCTATGATCTGACTTCCAGTTTGAGTAGGCTGCTGGATGTCTCAGATGATACTTTTTGGAGAACGGGATGGGTTCACATCAGGGTGCAGCATCAGATGGCATTCATTTTCAATGGTCAAGTTGTCATAGATACATCACTCCCTTTCGAAAGTAACAATTACAGCAAGATTTTGACTGTTAGTCCAATTGCTGTACCAGCATCAAAGAGAGTTCAATTTTCTGTTAAGGGTGTCAACATGATACGCCCTGCCACTAGGTTAATGTGTGCTTTAGAAGGGAAGTATCTGATCTGTGAAGATGATCGTGAGTCAATGGATCAATACTCCAAGGAGCTTGATGGACTTCAGTGCATCCAGTTTTCATGTTCTGTCCCTGTGACGATTGGAAGAGGATTTATTGAGATTGAGGACCAGGGTTTGAGTAGCAGCTCTTTTCCTTTCATAGTTGCGGAGGAGGATGTTTGCTCAGAAATTTGTGTGCTTGAGCCTCTGCTAGAATTAAGTGAAACTGATCCAGATATTGAGGGGACTGGAAAAATTAAAGCCAAAAGTCAAGCCATGGATTTCATTCATGAAATGGGTTGGCTTCTTCACAGAAGCCAATTGAAATCTAGGATGATTAATTTGAACTCTAGTGCAGATCTCTTTCCATTAAAACGGTTCAAGTGGCTTATGGAGTTTTCTATGGACCATGATTGGTGTGCAGTAGTGAAAAAACTGTTGAACCTACTGCTTGATGGAACTGTGAATACAGGGGATCACCCTTCCCTGTATCTTGCGCTTTCAGAGATGGGTCTCCTTCACAGAGCTGTAAGAAGAAATAGCAAGCAGTTAATGGAGATGCTTTTGAGATATGTTCCTGAGAATATTTCTGATAAAGTAAGACCTGAAGACAAGGCACTAGTTGATGGAGAGAATCAGAGCTTCTTGTTTAGACCTGATGTTGTCGGTCCTGCTGGTTTGACACCACTCCATATAGCAGCTGGGAAAGATGGTTCTGAGGATGTACTGGATGCTTTAACTAATGATCCCTGCATGGTGGGAATTGAGGCATGGAAGAATGCTCGTGACAGCACAGGCTCTACACCTGAGGATTATGCACGTTTACGTGGCCATTATACTTACATTCACCTGGTGCAGAAAAAAATTAACAAGAGACAAGGAGCAGCTCATGTGGTGGTTGAGATTCCCAGCAATCTGACCGAGAGCAATACAAACCAGAAGCAAAATGAGTCATTCACTAGCTTTGAGATCGGAAAAGCTGAAGTAACACATGGCCAAGGGCACTGTAAACTTTGTGATAATAAATTTTCTTGTAGAACTGCAGTAGCCAGAAGGTCTCTGGTATACAGACCTGCAATGCTCTCCATGGTGGCCATTGCAGCAGTCTGTGTCTGTGTGGCTCTTCTGTTTAAAAGCTCACCCGAAGTTCTATACATGTTCAAGCCCTTCAGATGGGAATCATTGGATTTCGGAACAAGCTAA 3039 0.437 MEARFDAEAYHFYGVGASSDLRSVGKRSLEWDSNDWRWDGDLFIASRVNQVPANGVGVVGQEFFPLGSGIPASNSSSSCSEEVDLRNPKGNKEGEKKRRVVVLEDDGLNEEAGTLSLKLGGHASPMVDREISSWDGMNGKKSRVAAGTSNRAVCQVEDCGADLSRAKDYHRRHKVCEMHSKASTALVGNAMQRFCQQCSRFHLLQEFDEGKRSCRRRLAGHNKRRRKTNHEAVPNGSSLNDDQTSSYLLISLLKILSNMHSDRSDQTTDQDLLTHLLRSLASQNGEQGGKNLSNLLREPENLLREGGSSRRPEMVSALYSNGSQGSLTVMRQHQTVSMTKVQQEVMHAHDAGAADQQLMSSIKPGISNSPPAYSEARDSTAGQIKMNNFDLNDIYIDSDDGMEDLERLPVSTNLVTNSLDYPWTQQDSHQSSPPQTSRNSDSASAHSPSSSSGEAQSRTDRIVFKLFGKEPNDFPLILRAQILDWLSHSPTDIESYIRPGCIVLTIYLRQAEAVWEELCYDLTSSLSRLLDVSDDTFWRTGWVHIRVQHQMAFIFNGQVVIDTSLPFESNNYSKILTVSPIAVPASKRVQFSVKGVNMIRPATRLMCALEGKYLICEDDRESMDQYSKELDGLQCIQFSCSVPVTIGRGFIEIEDQGLSSSSFPFIVAEEDVCSEICVLEPLLELSETDPDIEGTGKIKAKSQAMDFIHEMGWLLHRSQLKSRMINLNSSADLFPLKRFKWLMEFSMDHDWCAVVKKLLNLLLDGTVNTGDHPSLYLALSEMGLLHRAVRRNSKQLMEMLLRYVPENISDKVRPEDKALVDGENQSFLFRPDVVGPAGLTPLHIAAGKDGSEDVLDALTNDPCMVGIEAWKNARDSTGSTPEDYARLRGHYTYIHLVQKKINKRQGAAHVVVEIPSNLTESNTNQKQNESFTSFEIGKAEVTHGQGHCKLCDNKFSCRTAVARRSLVYRPAMLSMVAIAAVCVCVALLFKSSPEVLYMFKPFRWESLDFGTS* 1013
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02038 1012 Gene3D - 753 914 IPR036770 -
Rops6g02038 1012 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 89 898 IPR044817 GO:0003677
Rops6g02038 1012 MobiDBLite consensus disorder prediction 218 240 - -
Rops6g02038 1012 SUPERFAMILY SBT domain 152 232 IPR036893 GO:0003677|GO:0005634
Rops6g02038 1012 MobiDBLite consensus disorder prediction 71 98 - -
Rops6g02038 1012 ProSiteProfiles Zinc finger SBP-type profile. 151 228 IPR004333 GO:0003677
Rops6g02038 1012 MobiDBLite consensus disorder prediction 361 380 - -
Rops6g02038 1012 Gene3D - 145 215 IPR036893 GO:0003677|GO:0005634
Rops6g02038 1012 Pfam SBP domain 154 227 IPR004333 GO:0003677
Rops6g02038 1012 MobiDBLite consensus disorder prediction 423 457 - -
Rops6g02038 1012 SUPERFAMILY Ankyrin repeat 779 897 IPR036770 -
Rops6g02038 1012 FunFam Squamosa promoter-binding-like protein 14 145 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02038 Rops-Chr6 38355798 38369453 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02038 1 1012 SBP-box Gene Family AT3G60030 54.669 0.0 979
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Rops6g02038 SBP 2e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02038 - - gmx:100809806 1743.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops6g02038 6 38355798 38369453 Rops6g02038 6 38355798 38369453 ECH