Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02037 ATGAGTTGTTTCAGCTGTTGTGAGGAGGAAGAGTTCCACAGGGCTGCTGAAAATGGAGGACCATATGTCGTAAAAAATCCTGCAGGGAATGATGGAAATTTTCATGCATCTGAAACTGCAAAGCAGGGTGCTCAGACTGTTAAAGTCCAGCCCATTGAAGTCCCAGAGATACCGGCAGATGAACTAAAAGAAGTTACAGATAACTTTGGGCAAGATTCTCTGATTGGAGAGGGATCCTTTGGAAGAGTATATCATGGCATTCTTAAAAGTGGGCAGGTTGCAGCGATCAAGAAGTTAGATGTCAGTAAACAGCCTGATGAGGAATTCTTAGCCCAGGTTTCAATGGTATCAAGGTTGAAGCATGAAAATTTCGTTCAGTTGCTTGGATACTGTGTTGATGGAAACTCCCGTATTCTTGCTTATGAGTTTGCATCTAATGGGTCTCTCCATGATATTTTACATGGCAGGAAAGGTGTTAAAGGAGCACAGCCTGGTCCTGTTTTGACATGGGCACAGAGAGTAAAAATTGCTGTAGGGGCTGCAAGAGGGCTTGAATACTTGCACGAGAAGGCTGATCCCCACATTATCCACCGGGACATCAAGTCAAGCAATGTGTTAATCTTTGATGATGATGATGTTGCTAAAATTGCAGATTTTGATTTATCAAATCAGGCTCCAGACATGGCTGCACGTCTTCATTCCACTCGTGTCCTTGGAACCTTTGGTTATCATGCACCAGAATATGCAATGACTGGACAATTGAATGCTAAGAGTGATGTATACAGTTTTGGTGTTGTCCTTCTGGAACTTTTGACTGGAAGAAAACCTGTTGATCATACACTACCACGTCAACAGCAGAGTCTGGTTACTTGGGCTACACCAAAACTCAGTGAGGATAAAGTCAGGCAGTGTGTTGATGCAAGACTAGGAGGAGACTACCCACCGAAAGCAGTTGCCAAGATGGCCGCTGTTGCTGCACTGTGTGTGCAATATGAAGCTGATTTCAGACCGAACATGAGCATCGTAGTCAAAGCTCTACAACCTTTGTTGACTGCACGACCTGGACCTGCTGGTGAAACAGCAAATTAA 1089 0.4408 MSCFSCCEEEEFHRAAENGGPYVVKNPAGNDGNFHASETAKQGAQTVKVQPIEVPEIPADELKEVTDNFGQDSLIGEGSFGRVYHGILKSGQVAAIKKLDVSKQPDEEFLAQVSMVSRLKHENFVQLLGYCVDGNSRILAYEFASNGSLHDILHGRKGVKGAQPGPVLTWAQRVKIAVGAARGLEYLHEKADPHIIHRDIKSSNVLIFDDDDVAKIADFDLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLNAKSDVYSFGVVLLELLTGRKPVDHTLPRQQQSLVTWATPKLSEDKVRQCVDARLGGDYPPKAVAKMAAVAALCVQYEADFRPNMSIVVKALQPLLTARPGPAGETAN* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02037 362 Gene3D Transferase(Phosphotransferase) domain 1 144 354 - -
Rops6g02037 362 FunFam PTI1-like tyrosine-protein kinase 3 33 143 - -
Rops6g02037 362 FunFam pto-interacting protein 1 145 357 - -
Rops6g02037 362 CDD STKc_IRAK 75 349 - -
Rops6g02037 362 SMART serkin_6 69 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g02037 362 PIRSF ILK 22 353 - -
Rops6g02037 362 Gene3D Phosphorylase Kinase; domain 1 30 143 - -
Rops6g02037 362 SUPERFAMILY Protein kinase-like (PK-like) 48 346 IPR011009 -
Rops6g02037 362 ProSitePatterns Protein kinases ATP-binding region signature. 75 98 IPR017441 GO:0005524
Rops6g02037 362 Pfam Protein tyrosine and serine/threonine kinase 73 346 IPR001245 GO:0004672|GO:0006468
Rops6g02037 362 ProSiteProfiles Protein kinase domain profile. 69 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
Rops6g02037 362 ProSitePatterns Serine/Threonine protein kinases active-site signature. 195 207 IPR008271 GO:0004672|GO:0006468
Rops6g02037 362 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 4 352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02037 Rops-Chr6 38330979 38336732 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02037 1 355 Glycoside Hydrolase AT3G07070 44.173 2.88e-89 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIII Rops6g02037 PK_Tyr_Ser-Thr 5.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02037 K13436 - gmx:100808383 650.973