Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02036 ATGGTTCAAGGGAAAATTCTTGTATCTGGTGTATCCCTCATCCTCGTGGTGGGTGTTGCCATTGGTGTTGTCGTTGTTGTTAACAAAAAGGATAATACCGATCCTGCGATAGCATCTCAACAAAAATCTGTTGAGGCAATGTGTCAGGGAACTGATGACCCCAAGCTATGTCATGATACTCTTAGGAATGTGAAAACCTCCAATACCTCAGACCCAATGGCTTACATAGCAGCTGTAGTGGAAGCAAGCACCAAAAGTGTCATCAAGGCCTTGAACATGAGTGATAGGCTCTCAGTGGAACATGGTAAAGATGACCCTGGTACCAAGATGGCCCTTGATGATTGCAAGGACTTAATGGAATTCGCCATGGACAGCCTAGAAGCCTCGGCTAATTTGGTTCGTGATAACAACATACAAGCTGTTCATGACCAATCCCCTGACTTCAGAAACTGGTTGAGTGCTGTTATCTCATACCAACAGTCATGCATGGAAGGGTTTGACAATGAGAAAGATGGTGAGCAAGAGGTGAAGGAAAAGTTGCAAGAGGATAGTTTGGACCAAATGGGGAAACTCACTGCCATAACACTTGACATTGTCTCTGATTTATCCAACATCCTTCAGAGTTTTGACTTGAAATTAGATCTGAATCCTGCATCTCGTCGTCTTCTTGAGGCAGATGGTGTTGACAGTGAAGGATTTCCCGCATGGTTCTCAGGTGCAGATCGCAAGCTCTTGGCTCATATGCGCCGGGGAGGTCGTCCTCCAGTACCACCAAACGCAGTGGTTGCCAAAGATGGTAGTGGTAAATTTAAAACCATTAAGGATGCTATTGACTCCTACCCCAAGGGTTTCAAAGGTAGATACATTATCTATGTTAAGGCTGGTGTCTATGATGAATACATCACCATTCCAAAAAAGTCGGTGAATATTCTTATGTATGGTGATGGCCCTACAAAGACCATTGTCACTGGTCACAAAAACTTTAGAGATGGCGTGAAGACAATGCAAACTGCCACCTTCGCTAATACTGCAAATGGATTCATTGCCAAGTCAATGGCATTTGAGAACACTGCTGGTCCTGAAGGTCACCAAGCAGTGGCATTTAGAAACCAGGGAGATATGTCAGCTTTCTTCGATTGTGCCATGCATGGTTTCCAAGACACCTTGTACGTGCAAGCAAATCGTCAGTTCTACCGCAACTGTGAAATCTCTGGTACAGTGGACTTCATCTTCGGTGCATCACCAACCCTGATCCAAAATTCTAGAATCATTGTGAGGAAGCCAGGCCCAAAACAATTCAACACGGTGACAGCAGATGGCACATCACAGAAGAACATGGCCACGGGGATTGTGTTACAGAATTGTGAGATAGTCCCAGAGAGGGCTTTGTTCCCTGTAAGGTTTCAATTCAAATCGTACTTGGGGAGGCCATGGAAGGAATTTTCTAGAACAGTGGTTATGGAGTCCAACATTGGTGACTTTATTCAGCCAGATGGGTGGAGTGTTTGGAGTGGGAACCAATTTCTTAACACCTTGTATTATGCTGAATATGCTAACAAGGGACCTGGTGCCAATGTTCAAAGAAGGGTAAGGTGGAAGGGTTACCATGGAAATATCAACATGAATGAAGCTGCGCGATTCACTGCAGGTCAATTCCTCAGAGCTGGACGTGCAGGAGAGGATTGGTTGAAGGCTACTGGCATTCCTTACGCCATTTCCTTCACCACCAAACGTTAA 1737 0.4496 MVQGKILVSGVSLILVVGVAIGVVVVVNKKDNTDPAIASQQKSVEAMCQGTDDPKLCHDTLRNVKTSNTSDPMAYIAAVVEASTKSVIKALNMSDRLSVEHGKDDPGTKMALDDCKDLMEFAMDSLEASANLVRDNNIQAVHDQSPDFRNWLSAVISYQQSCMEGFDNEKDGEQEVKEKLQEDSLDQMGKLTAITLDIVSDLSNILQSFDLKLDLNPASRRLLEADGVDSEGFPAWFSGADRKLLAHMRRGGRPPVPPNAVVAKDGSGKFKTIKDAIDSYPKGFKGRYIIYVKAGVYDEYITIPKKSVNILMYGDGPTKTIVTGHKNFRDGVKTMQTATFANTANGFIAKSMAFENTAGPEGHQAVAFRNQGDMSAFFDCAMHGFQDTLYVQANRQFYRNCEISGTVDFIFGASPTLIQNSRIIVRKPGPKQFNTVTADGTSQKNMATGIVLQNCEIVPERALFPVRFQFKSYLGRPWKEFSRTVVMESNIGDFIQPDGWSVWSGNQFLNTLYYAEYANKGPGANVQRRVRWKGYHGNINMNEAARFTAGQFLRAGRAGEDWLKATGIPYAISFTTKR* 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02036 578 SMART PMEI_2 39 198 IPR006501 GO:0004857
Rops6g02036 578 ProSitePatterns Pectinesterase signature 2. 403 412 IPR033131 -
Rops6g02036 578 Gene3D - 255 574 IPR012334 -
Rops6g02036 578 FunFam Pectinesterase 40 203 - -
Rops6g02036 578 Coils Coil 163 183 - -
Rops6g02036 578 Pfam Pectinesterase 259 554 IPR000070 GO:0030599|GO:0042545
Rops6g02036 578 CDD PMEI-like_3 46 204 - -
Rops6g02036 578 Gene3D Invertase/pectin methylesterase inhibitor family protein 40 204 IPR035513 -
Rops6g02036 578 SUPERFAMILY Pectin lyase-like 255 571 IPR011050 -
Rops6g02036 578 FunFam Pectinesterase 254 574 - -
Rops6g02036 578 PANTHER PECTINESTERASE 19 564 - -
Rops6g02036 578 NCBIfam pectinesterase inhibitor domain 23 200 IPR006501 GO:0004857
Rops6g02036 578 Pfam Plant invertase/pectin methylesterase inhibitor 43 198 IPR006501 GO:0004857
Rops6g02036 578 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 42 203 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02036 Rops-Chr6 38325815 38328129 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02036 4 574 Carbohydrate Esterase AT2G47030 40.461 2.48e-140 417
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02036 K01051 - gmx:100775246 891.723