Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops6g02035 ATGGAAAGAAAAGCACTTATTTCTGCTGTTTCTGTCATTCTCGTAGTTGGTGTTGCCCTTGGCGTCGTTGCACTTATCAACACCAACCAAAACGGTGACAGTAACGAATCGGGCCAAAACGACAACGGGTTGACCACCCACAATAAGGCTGTGAAAACCGTGTGCGAAAACACCGATGACCAGAAACTCTGCCTTGACACTCTCAACCCTGTCAACACCTCAGACCCAAAGGACTACATCCAAACCGTGGTTAAAACCTCCATGGAAAGCGTCATCAAAGCCTTCAACATGAGTGATAGGCTCACGATAGAAAATGGGAATAGCAACAATACCGTCAAGATGGCCCTTGAAGATTGCAAGGACTTGTTACAATTCGCCAAAGATGAATTACAAGCATCAAATATTCTAGTTACCGACAGCAACATGAACACCGTTAATGACCGTACCGCAGACCTTAAAAACTGGTTAGGTGCTGTCATTGCCTACCAACAATCTTGCCTTGATGGGTTCAACACTGAAGGTGAGAAAGAGGTTCAGACACAGTTGCAAACAGGTAGCTTGGACAACGTGGGAAAGCTTACTGCGTTAGCACTTGATGTTGTCTCTGCGATCTCACAAGTACTCTCTGCACTCGACTTGAATTTGAATCAGAAACCTTCCTCTCGTCGCCTTCTTGAGGTGGATCAAGATGGGTATCCATCTTGGATGTCCAATCCAGATCGCAAGCTCTTGGCTGATATGAAAAAAGGAGATTCAGTACCACCTAATGCAGTTGTTGCCAAAGATGGTAGTGGCAAATATAAGACTGTTCTGGATGCTATTAACTCCTACCCCAAAAATCATCAAGGCCGATACGTTATCTACGTTAAGGCTGGTACCTATGACGAGTATATTACCGTTGATAAGAAGAAGAAGAATATTTTAATGTATGGTGATGGCCCTACAAAAACCATTATCACTGGTCGTAAAAACTTCATAGATGGTTGGAAGACAATGAGAACTGCTACCTTTACCACTGTTGCTGAAGATTTCATTGCCAAGTCAATAGCATTCGAGAACACTGCTGGTGCAAGCAAACACCAAGCGGTAGCACTTCGCGTGCAAGGTGATCGGTCGGCTTTCTTCGACTGCGCCATGCATGGTTATCAGGACACATTGTACGCCCACGCTCACCGTCAATTTTACCGAAACTGTGAAATCTCTGGCACTGTGGATTTCATATTCGGCTACGCATCAACCTTGATCCAGAGCTCCAAGATCATTGTGAGGAAGCCCGACCCTAATCAACAAAACATAGTGGTAGCTGATGGCACGGGCCAAAAGAACATGCCCACTGGAGTTGTGCTTCAGAATTGTGAGATCGTGCCAGAGAAAGCCCTCGTCCCTGACAAGTTGAAGGTGAGAACCTTTTTGGCGAGACCATGGAAAGCATATTCAAGGGCAATTTTCATGGAAAATACTATTGATGATGTCATTCAGCCAGATGGGTATCTTCCATGGGCAGGGACTCAATTCCTTGACACGTGCTACTTTGCTGAGTATGCTAACACTGGTCCTGGTGCCAATGTTCAAAGAAGAGTCAAGTGGGGTCGTGGGGTTCTTAGCAAAGCTGATGCTGCTCGATACACTGCTGATCAATGGCTCCAAGCCAACACATGGTTGCCAGCCACTGGCATACCCTTCGATCTTGGATTCACTAGAGCTTGA 1707 0.4569 MERKALISAVSVILVVGVALGVVALINTNQNGDSNESGQNDNGLTTHNKAVKTVCENTDDQKLCLDTLNPVNTSDPKDYIQTVVKTSMESVIKAFNMSDRLTIENGNSNNTVKMALEDCKDLLQFAKDELQASNILVTDSNMNTVNDRTADLKNWLGAVIAYQQSCLDGFNTEGEKEVQTQLQTGSLDNVGKLTALALDVVSAISQVLSALDLNLNQKPSSRRLLEVDQDGYPSWMSNPDRKLLADMKKGDSVPPNAVVAKDGSGKYKTVLDAINSYPKNHQGRYVIYVKAGTYDEYITVDKKKKNILMYGDGPTKTIITGRKNFIDGWKTMRTATFTTVAEDFIAKSIAFENTAGASKHQAVALRVQGDRSAFFDCAMHGYQDTLYAHAHRQFYRNCEISGTVDFIFGYASTLIQSSKIIVRKPDPNQQNIVVADGTGQKNMPTGVVLQNCEIVPEKALVPDKLKVRTFLARPWKAYSRAIFMENTIDDVIQPDGYLPWAGTQFLDTCYFAEYANTGPGANVQRRVKWGRGVLSKADAARYTADQWLQANTWLPATGIPFDLGFTRA* 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops6g02035 568 FunFam Pectinesterase 250 565 - -
Rops6g02035 568 Pfam Pectinesterase 256 550 IPR000070 GO:0030599|GO:0042545
Rops6g02035 568 FunFam Pectinesterase 47 205 - -
Rops6g02035 568 Gene3D Invertase/pectin methylesterase inhibitor family protein 47 206 IPR035513 -
Rops6g02035 568 NCBIfam pectinesterase inhibitor domain 45 200 IPR006501 GO:0004857
Rops6g02035 568 Pfam Plant invertase/pectin methylesterase inhibitor 50 199 IPR006501 GO:0004857
Rops6g02035 568 PANTHER PECTINESTERASE 15 555 - -
Rops6g02035 568 CDD PMEI-like_3 53 205 - -
Rops6g02035 568 Gene3D - 250 565 IPR012334 -
Rops6g02035 568 SMART PMEI_2 46 200 IPR006501 GO:0004857
Rops6g02035 568 ProSitePatterns Pectinesterase signature 2. 400 409 IPR033131 -
Rops6g02035 568 SUPERFAMILY Pectin lyase-like 254 563 IPR011050 -
Rops6g02035 568 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 48 204 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops6g02035 Rops-Chr6 38307247 38316752 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops6g02035 2 565 Carbohydrate Esterase AT3G05610 39.543 3.83e-142 424
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops6g02035 K01051 - gmx:100820142 885.945